Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060134.seq
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 152 2e-37
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 152 2e-37
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 150 1e-36
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 81 5e-16
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 81 5e-16
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 78 7e-15
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 55 5e-08
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 36 0.027
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 29 4.1
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 7.1
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 7.1
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 7.1
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 27 9.4
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 27 9.4
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 27 9.4
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 27 9.4
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 27 9.4
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 27 9.4
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 27 9.4
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 27 9.4
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 152 bits (369), Expect = 2e-37
Identities = 70/101 (69%), Positives = 81/101 (80%)
Frame = +2
Query: 254 VHARQQXRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKI 433
+HARQQ RSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK+
Sbjct: 37 IHARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKL 96
Query: 434 SEEXXXNNFVLIYELLDEILDFGYPRILILGAXRHSSLQQG 556
+EE NNFVLIYELLDEILDFGYP+ G + QQG
Sbjct: 97 NEENVKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQG 137
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +3
Query: 147 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 254
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNV
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNV 36
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 152 bits (369), Expect = 2e-37
Identities = 70/101 (69%), Positives = 81/101 (80%)
Frame = +2
Query: 254 VHARQQXRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKI 433
+HARQQ RSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK+
Sbjct: 37 IHARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKL 96
Query: 434 SEEXXXNNFVLIYELLDEILDFGYPRILILGAXRHSSLQQG 556
+EE NNFVLIYELLDEILDFGYP+ G + QQG
Sbjct: 97 NEENVKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQG 137
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +3
Query: 147 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 254
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNV
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNV 36
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 150 bits (363), Expect = 1e-36
Identities = 69/101 (68%), Positives = 80/101 (79%)
Frame = +2
Query: 254 VHARQQXRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKI 433
+HARQQ RSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVF FL + D MQSYFGK+
Sbjct: 37 IHARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKL 96
Query: 434 SEEXXXNNFVLIYELLDEILDFGYPRILILGAXRHSSLQQG 556
+EE NNFVLIYELLDEILDFGYP+ G + QQG
Sbjct: 97 NEENVKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQG 137
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +3
Query: 147 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 254
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNV
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNV 36
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 81.4 bits (192), Expect = 5e-16
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = +2
Query: 278 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNN 457
+PV T+F IK NI+L + + NVN M+ FL K +V YF + EE +N
Sbjct: 47 APVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDN 106
Query: 458 FVLIYELLDEILDFGYPRILILGAXRHSSLQQGHQ-VXLPR 577
FV+IYELLDE++DFG+P+ + Q+G + + PR
Sbjct: 107 FVVIYELLDEMMDFGFPQTTESRILQEYITQEGQKLISAPR 147
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 159 LFVYNHKGEVLISRVYRDDIGRNAVDAF 242
+F+ + KG+ +ISR YR DI A+D F
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF 33
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 81.4 bits (192), Expect = 5e-16
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = +2
Query: 278 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNN 457
+PV T+F IK NI+L + + NVN M+ FL K +V YF + EE +N
Sbjct: 47 APVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDN 106
Query: 458 FVLIYELLDEILDFGYPRILILGAXRHSSLQQGHQ-VXLPR 577
FV+IYELLDE++DFG+P+ + Q+G + + PR
Sbjct: 107 FVVIYELLDEMMDFGFPQTTESRILQEYITQEGQKLISAPR 147
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 159 LFVYNHKGEVLISRVYRDDIGRNAVDAF 242
+F+ + KG+ +ISR YR DI A+D F
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF 33
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 77.8 bits (183), Expect = 7e-15
Identities = 39/100 (39%), Positives = 57/100 (57%)
Frame = +2
Query: 278 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNN 457
SPV S+ +IK N++L ++K+N N +V L KI +V YF + EE +N
Sbjct: 47 SPVLVHQGISYTYIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDN 106
Query: 458 FVLIYELLDEILDFGYPRILILGAXRHSSLQQGHQVXLPR 577
FV+IYEL DE+LDFGYP+ + QQG+++ R
Sbjct: 107 FVIIYELFDEMLDFGYPQTTESKILQEFITQQGNRLETVR 146
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 150 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 242
I GLF+ + KG V+ISR YR D+ + ++ F
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKF 33
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/92 (29%), Positives = 46/92 (50%)
Frame = +2
Query: 239 IQSECVHARQQXRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQS 418
IQ + +H P+ + ++ + N++L AV MV EFL ++
Sbjct: 35 IQKKSIHPEDVP--PIISTPHHYLINVYQNNLFLVAVITVETPPLMVIEFLHRVIQTFTQ 92
Query: 419 YFGKISEEXXXNNFVLIYELLDEILDFGYPRI 514
YF + S+ N V+++ELLDE+LD G+P +
Sbjct: 93 YFDEFSDSSMKENCVMVFELLDEMLDNGFPLV 124
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 326 ANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNNFVLIYELLDEIL 493
A+++ +QN N + E + + +++ YFG + E NF Y +LDE L
Sbjct: 63 ASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL 118
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 202 TLEINTSPLWL*TNKPPIIVGEASHSFKIGFNVIAIQRLHPFRNST*CR 56
T+++ T+ W NK P+ V +A+ K+GF+ + L P NS CR
Sbjct: 105 TIDLITT--WSENNKLPLAVHKAALLNKLGFSSNCVLLLAPLINSLVCR 151
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 352 CDRCQPNICTLDMEERCACD 293
CDRC+PN + E C C+
Sbjct: 685 CDRCKPNFYNFPICEECNCN 704
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 352 CDRCQPNICTLDMEERCACD 293
CDRC+PN + E C C+
Sbjct: 685 CDRCKPNFYNFPICEECNCN 704
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 352 CDRCQPNICTLDMEERCACD 293
CDRC+PN + E C C+
Sbjct: 685 CDRCKPNFYNFPICEECNCN 704
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 352 CDRCQPNICTLDMEERCACD 293
CDRC+PN + E C C+
Sbjct: 685 CDRCKPNFYNFPICEECNCN 704
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 132 EASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVS 257
+++P I +F ++ G S Y DDI + A+D FRV S
Sbjct: 264 QSNPVDIAKVFKPDYVGGNEYSFEYSDDIHKFAIDCFRVGES 305
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 284 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQS 418
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 394
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 284 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQS 418
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 340 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 384
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 284 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQS 418
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 394
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 284 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQS 418
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 394
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 284 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQS 418
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 394
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 284 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQS 418
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 340 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 384
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 150 SLWVRPHTLSKLVSM*LLFSDYIPLEIQRNVGSIFLIRELFNPKMSRL 7
SL + L K +S L +D + +QRNV +FL R F + ++
Sbjct: 568 SLTIEDIPLYKKISRLYLINDILSNCVQRNVRDVFLYRSHFEALLEKI 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,476
Number of Sequences: 27780
Number of extensions: 291035
Number of successful extensions: 699
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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