Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060134.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 361 ILLCDRCQPNICTLDMEERCACDV 290
           I+ C  C PN CT      C  ++
Sbjct: 424 IVTCTNCGPNPCTHTTTNGCTAEL 447


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 361 ILLCDRCQPNICTLDMEERCACDV 290
           I+ C  C PN CT      C  ++
Sbjct: 410 IVTCTNCGPNPCTHTTTNGCTAEL 433


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 361 ILLCDRCQPNICTLDMEERCACDV 290
           I+ C  C PN CT      C  ++
Sbjct: 444 IVTCTNCGPNPCTHTTTNGCTAEL 467


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 361 ILLCDRCQPNICTLDMEERCACDV 290
           I+ C  C PN CT      C  ++
Sbjct: 393 IVTCTNCGPNPCTHTTTNGCTAEL 416


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 212 ISVDSRDQHLAFMVINEQAPDHCG 141
           + V + DQ+ + ++I   +PDH G
Sbjct: 658 VHVTNMDQYNSILMIEHLSPDHNG 681


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,335
Number of Sequences: 438
Number of extensions: 3570
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)