Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060133.seq
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   186   1e-49
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   186   1e-49
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   183   2e-48
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   178   3e-47
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.002
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.1  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  186 bits (454), Expect = 1e-49
 Identities = 93/126 (73%), Positives = 100/126 (79%)
 Frame = +2

Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
           TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG
Sbjct: 15  TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 74

Query: 437 QTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYPHTSRRLATNPAACRFS 616
           QTREHALLAFTLGVKQLIVGVNKM             + +++     +++  NPAA  F 
Sbjct: 75  QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAF- 133

Query: 617 CPFSGW 634
            P SGW
Sbjct: 134 VPISGW 139



 Score = 69.3 bits (162), Expect = 3e-14
 Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
 Frame = +1

Query: 508 DSTEPPYSEPRFEEIKKEVSSYIKKIGYQPSCLSLFVPIF-WMGTXDHHVGSPL 666
           DSTEPPYSE RFEEIKKEVSSYIKKIGY P+ ++ FVPI  W G     V S +
Sbjct: 99  DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVA-FVPISGWHGDNMLEVSSKM 151



 Score = 31.9 bits (69), Expect = 0.006
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 216 WVLDKLKAERERG 254
           WVLDKLKAERERG
Sbjct: 1   WVLDKLKAERERG 13


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  186 bits (454), Expect = 1e-49
 Identities = 93/126 (73%), Positives = 100/126 (79%)
 Frame = +2

Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
           TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG
Sbjct: 72  TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 131

Query: 437 QTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYPHTSRRLATNPAACRFS 616
           QTREHALLAFTLGVKQLIVGVNKM             + +++     +++  NPAA  F 
Sbjct: 132 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAF- 190

Query: 617 CPFSGW 634
            P SGW
Sbjct: 191 VPISGW 196



 Score =  150 bits (363), Expect = 1e-38
 Identities = 69/70 (98%), Positives = 69/70 (98%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 225 DKLKAERERG 254
           DKLKAERERG
Sbjct: 61  DKLKAERERG 70



 Score = 69.3 bits (162), Expect = 3e-14
 Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
 Frame = +1

Query: 508 DSTEPPYSEPRFEEIKKEVSSYIKKIGYQPSCLSLFVPIF-WMGTXDHHVGSPL 666
           DSTEPPYSE RFEEIKKEVSSYIKKIGY P+ ++ FVPI  W G     V S +
Sbjct: 156 DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVA-FVPISGWHGDNMLEVSSKM 208


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  183 bits (445), Expect = 2e-48
 Identities = 91/124 (73%), Positives = 98/124 (79%)
 Frame = +2

Query: 263 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 442
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 443 REHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYPHTSRRLATNPAACRFSCP 622
           REHALLAFTLGVKQLIVGVNKM             + +++     +++  NPAA  F  P
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAF-VP 119

Query: 623 FSGW 634
            SGW
Sbjct: 120 ISGW 123



 Score = 69.3 bits (162), Expect = 3e-14
 Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
 Frame = +1

Query: 508 DSTEPPYSEPRFEEIKKEVSSYIKKIGYQPSCLSLFVPIF-WMGTXDHHVGSPL 666
           DSTEPPYSE RFEEIKKEVSSYIKKIGY P+ ++ FVPI  W G     V S +
Sbjct: 83  DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVA-FVPISGWHGDNMLEVSSKM 135


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  178 bits (434), Expect = 3e-47
 Identities = 89/126 (70%), Positives = 99/126 (78%)
 Frame = +2

Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
           TIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEFEAGISKNG
Sbjct: 72  TIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNG 131

Query: 437 QTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYPHTSRRLATNPAACRFS 616
           QTREHALLAFTLGVKQLIVGVNKM   +         + +++     +++  N A+  F 
Sbjct: 132 QTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAF- 190

Query: 617 CPFSGW 634
            P SGW
Sbjct: 191 VPISGW 196



 Score =  150 bits (363), Expect = 1e-38
 Identities = 69/70 (98%), Positives = 69/70 (98%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 225 DKLKAERERG 254
           DKLKAERERG
Sbjct: 61  DKLKAERERG 70



 Score = 62.1 bits (144), Expect = 5e-12
 Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
 Frame = +1

Query: 508 DSTEPPYSEPRFEEIKKEVSSYIKKIGYQPSCLSLFVPIF-WMG 636
           D T+PPYSE RFEEIKKEVSSYIKKIGY  + ++ FVPI  W G
Sbjct: 156 DMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVA-FVPISGWHG 198


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229



 Score = 25.4 bits (53), Expect = 0.49
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 57  KTHINIVVIGHVDSGKST 110
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 66  INIVVIGHVDSGKST 110
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 58  FSLPIFG*SRITNCV*Y 8
           FSLPIFG   I +C+ Y
Sbjct: 57  FSLPIFGTRWIFSCIGY 73


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 287 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 388
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 287 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 388
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 481 TAHRRSKQNDSTEPPYSEPRFEEIKKEV 564
           T+  R++   S  PP ++PR E + + V
Sbjct: 725 TSLERTQPTMSQMPPTAQPRMERLAEAV 752


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,102
Number of Sequences: 438
Number of extensions: 4070
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)