Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060132.seq
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.4  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   7.2  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 185 ILQEKIPKEQEKIREFRKKHG 247
           +L EK+ KE  ++R F +K+G
Sbjct: 262 LLCEKVAKEDIQVRFFEEKNG 282


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 293 CVESKVWFGKPLCW 334
           CV  K   GKP CW
Sbjct: 873 CVTCKCENGKPTCW 886


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 338  ASSTEVSQTRPLIPRMPPYIISTVTS 261
            ASST    T P++P  P   ++T TS
Sbjct: 2288 ASSTMAPSTTPMVPDKP---VTTTTS 2310


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 206 KEQEKIREFRKKHGSTKSERS 268
           K++E  R+    HG  KSER+
Sbjct: 172 KDEEDKRDDTDMHGRIKSERN 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,420
Number of Sequences: 336
Number of extensions: 3104
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)