Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060132.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 93 3e-20
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 36 0.007
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 2.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.4
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 25 7.8
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 7.8
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 7.8
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 93.1 bits (221), Expect = 3e-20
Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Frame = +1
Query: 256 VGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVF 435
+GEVT++ MYGG RG++ L+WE SVLD +EGIRFRG +IPECQ+ LP + G++PLPE
Sbjct: 69 IGEVTINQMYGGARGVRSLIWEGSVLDPNEGIRFRGYTIPECQKLLPSSPNGKQPLPESL 128
Query: 436 SGFSSLAIYPPKRK*SAV*R-MGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTATST 612
P + A+ ++L + + P LHPM+QF AVTA
Sbjct: 129 FWLLVTGEIPTLSQVQALSADWAARSQLPKFV-EELIDRCPPTLHPMAQF-SLAVTALEH 186
Query: 613 VNLNFXKXYFR 645
+ F K Y R
Sbjct: 187 -DSAFAKAYER 196
Score = 33.9 bits (74), Expect = 0.022
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +3
Query: 429 SLFWLLVTGDIPTEAQVK 482
SLFWLLVTG+IPT +QV+
Sbjct: 127 SLFWLLVTGEIPTLSQVQ 144
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 158 SAEQTNLKSILQEKIPKEQEKIREFRKKHG 247
S ++LK L E IP++Q +I++FR +HG
Sbjct: 36 STRSSSLKDRLAELIPEKQAEIKKFRAEHG 65
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 35.5 bits (78), Expect = 0.007
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -1
Query: 344 SSASSTEVSQTRPLIPRMPPYII-STVTSP-T*WNHASFGIRGSSLVLWESFPGEYFLNS 171
SS SST L +PP I S P N+ S G+RG ++ L+ +PG
Sbjct: 560 SSCSSTPKPFNSKLRAHLPPLSIGSPAVQPLANDNYDSLGVRGLNMELFNDYPGNMHNIK 619
Query: 170 SVQRLDLEVELSQSD 126
SV L++++ L + D
Sbjct: 620 SVLSLEIDIVLGEMD 634
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 161 AEQTNLKSILQEKIPKEQEKIREFRKKHG 247
AEQ I KIP E K+RE+ +++G
Sbjct: 33 AEQKEKDRIKALKIPYEDSKVREYLRRYG 61
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREF 232
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 146 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKSERSQL 274
LR L E NL+ + ++ +EQE+ + R+K + S+ S+L
Sbjct: 123 LRALQEESANLRRQRENRLREEQEQSK--RRKQETPSSKISEL 163
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 194 PGEYFLNSSVQRLDLEVELSQSDMLSA 114
P E + N VQ+ DLE EL + D+L+A
Sbjct: 1069 PSEMYRNHLVQKADLEKELPE-DVLNA 1094
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 140 VLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKH 244
V+L A + S +E IPK++ E RKKH
Sbjct: 235 VILGEDEAMEEEALSEAEENIPKKKPDFNELRKKH 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,393
Number of Sequences: 5004
Number of extensions: 54069
Number of successful extensions: 190
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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