Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060132.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 97 2e-20
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 94 8e-20
03_04_0150 - 17720697-17720800,17721737-17722172 29 3.5
02_04_0607 - 24302582-24303075,24303150-24304197 29 3.5
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 29 4.6
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 28 6.0
07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75... 28 8.0
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 8.0
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 96.7 bits (230), Expect = 2e-20
Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Frame = +1
Query: 256 VGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVF 435
+G +TVDM+ GGMRG+ G++WETS+LD DEGIRFRGLSIPECQ+ LP A EPLPE
Sbjct: 67 LGNITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPECQKVLPTAVKDGEPLPEGL 126
Query: 436 SGFSSLAIYPPKRK*SAV*R-MGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTATST 612
P K + A+ + + + + G + + +P HPM+QF +
Sbjct: 127 LWLLLTGKVPTKEQVDALSKELASRSSVPGHV-YEAIDALPVTAHPMTQFTTGVMAL--Q 183
Query: 613 VNLNFXKXY 639
V F K Y
Sbjct: 184 VESEFQKAY 192
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +2
Query: 158 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 256
SA +LKS LQE IP++Q+++++ + +HG +
Sbjct: 34 SASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQ 66
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 94.3 bits (224), Expect = 8e-20
Identities = 54/129 (41%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
Frame = +1
Query: 256 VGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVF 435
+G +TVDM+ GGMRG+ G++WETS+LD +EGIRFRGLSIPECQ+ LP A G EPLPE
Sbjct: 67 LGNITVDMVLGGMRGMIGMLWETSLLDPEEGIRFRGLSIPECQKVLPTAIKGGEPLPEGL 126
Query: 436 SGFSSLAIYPPKRK*SAV*R-MGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTATST 612
P K + A+ + + + + G + + +P HPM+QF +
Sbjct: 127 LWLLLTGKVPTKEQVDALSKELVTRSSVPGHV-YKAIDALPVTAHPMTQFTTGVMAL--Q 183
Query: 613 VNLNFXKXY 639
V F K Y
Sbjct: 184 VESEFQKAY 192
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 158 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 256
S +LKS LQE IP++Q+++++ + +HG +
Sbjct: 34 SPSDLDLKSQLQELIPEQQDRLKKLKSEHGKVQ 66
>03_04_0150 - 17720697-17720800,17721737-17722172
Length = 179
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Frame = -3
Query: 363 TTETDSFIGIQHRGFPNQT-FDSTHATVHHINCDLSDLVEPCFFRNSRIFSCSLGIFSWR 187
T++ + IG+ R + S HA + + + L C R +C + + W
Sbjct: 47 TSDGAAGIGVVIRDHDGSSVLSSWHAVLQYPVQRMWKLALACQIRMKLALACQIRMSLWS 106
Query: 186 ILFKFV----CSALRPRSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLPHKSRQLARD 19
ILF + SA +++ +G + C L + A + ER L H+SR D
Sbjct: 107 ILFNQIASDDASADINTGKSILMGRSNCIEPGLSALTARGANY---ERALGHQSRVTNHD 163
Query: 18 R 16
R
Sbjct: 164 R 164
>02_04_0607 - 24302582-24303075,24303150-24304197
Length = 513
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 210 NKRRSANSERSMV---PLSRRGHS*YDVRWHAWNQRSGLGNLCAGCR*RNPFPWSIHP*V 380
N R +A S R+ + L H DVR H R G G AG + PF W+ HP +
Sbjct: 63 NIRYNATSGRAGLRFQQLHHHHHGHVDVRHH---HRGGAG---AGGAQQGPFQWADHPRL 116
Query: 381 PTATAQG*GW 410
T A+ GW
Sbjct: 117 VTEAAEN-GW 125
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 399 G*GWRRTTTRSLFWLLVTGDIPTEAQVKRCL 491
G W+ + TR LF+ D+P E+ + +C+
Sbjct: 217 GGSWKASDTRELFYSFHIDDVPAESVMHKCV 247
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 350 IPSSASSTEVSQTRPLIPRMPPYIISTVTSPT 255
+PS+A S +V+ + P I R PP + + T PT
Sbjct: 162 VPSNAKSADVASSTPKIQRPPP-VKAVTTVPT 192
>07_01_0101 -
752935-753223,753311-753408,753674-753764,753844-753882,
754019-754110,754535-754634,754742-754828,754949-755250,
756036-756242,756319-756405,756978-757058,757257-757365,
758037-758093,758188-758258,758414-758521,758874-758974,
759111-759177,759434-759535,759618-759662,759916-760511,
761956-762065,762165-762280
Length = 984
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 586 EETATWDAVCRAYCFNIGXT 527
E +A W+A+C AYC + T
Sbjct: 850 EMSAAWEAICEAYCSDTNPT 869
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 375 RDG*TTETDSFIGIQHRGFPNQTFDSTHATVHH 277
+DG D IG++ + FP + D T A HH
Sbjct: 407 KDGELDSKDLDIGLKRKPFPRKMEDPTSADAHH 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,680,746
Number of Sequences: 37544
Number of extensions: 390616
Number of successful extensions: 1136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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