Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060132.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)               31   1.2  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          30   2.0  
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   30   2.0  
SB_50739| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)           29   2.7  
SB_15503| Best HMM Match : DUF217 (HMM E-Value=5.3)                    29   2.7  
SB_5503| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_42142| Best HMM Match : Transposase_35 (HMM E-Value=1.2)            29   4.7  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    28   6.2  
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              28   6.2  
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    28   6.2  
SB_30360| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     28   6.2  
SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             28   8.1  
SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_16423| Best HMM Match : ATE_C (HMM E-Value=0.00015)                 28   8.1  
SB_25729| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 45/108 (41%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
 Frame = +1

Query: 292 MRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVFSGFSSLAIYPPK 471
           MRGIKGLV ETS+LD +E               LPKA GG+EPLPE           P K
Sbjct: 1   MRGIKGLVTETSLLDPEE--------------LLPKADGGKEPLPEGIFWLLMTGEIPTK 46

Query: 472 RK*SAV*R-MGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTATST 612
           ++   + +    +A+L      Q  NN P  LHPMSQF  AA+TA +T
Sbjct: 47  QQVDNLSKEWAAKADLPQHV-VQMLNNFPDTLHPMSQF-SAAITAMNT 92



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 27/87 (31%), Positives = 36/87 (41%)
 Frame = +3

Query: 405 GWRRTTTRSLFWLLVTGDIPTEAQVKRCLKNGRRGGANRAHVXPMLKQYARQTASHVAVS 584
           G +      +FWLL+TG+IPT+ QV    K          HV  ML  +      H    
Sbjct: 25  GGKEPLPEGIFWLLMTGEIPTKQQVDNLSKEWAAKADLPQHVVQMLNNF--PDTLHPMSQ 82

Query: 585 SGCRHRNFNSESKFR*XLLQKGVHKSQ 665
                   N+ESKF      KGV+K +
Sbjct: 83  FSAAITAMNTESKFV-QAYNKGVNKKE 108


>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
          Length = 430

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 268 TVDMMYGGMRG-IKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVFS 438
           TVD++Y  +RG    LV   + LD  E ++F  L   +CQ   P A+  +  LP++ +
Sbjct: 254 TVDLLYLFVRGDFTPLVSCDACLDL-EVLQFMNLDFIQCQPTAPDAQDSKHTLPDIIT 310


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 371 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIIS 273
           M  P + + ++A+ TE++ T+PL+P  P  ++S
Sbjct: 366 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLVS 398


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 322 TSVLDADEGIRFRGLSIPECQQQLPKAKGG 411
           +S+ DA   IRF  LS+PE + + PK+  G
Sbjct: 872 SSIFDALRNIRFPRLSLPELEGRFPKSSPG 901


>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 407

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 371 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIIS 273
           M  P + + ++A+ TE++ T+PL+P  P  ++S
Sbjct: 118 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLVS 150


>SB_50739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 122 ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKSERSQLI 277
           AC    V  RG   +QTNL+ + +   P+E++     RK+  +++  R +++
Sbjct: 4   ACALDLVHDRGRRFDQTNLRPMAEVSFPRERQPSEIQRKEASASRETRGRVL 55


>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 149 RGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 256
           RGL  E+ +L+ +LQE   K   + +E ++ HG  K
Sbjct: 544 RGLKVEKEDLERVLQEAGEKVASQQKELKEAHGQRK 579


>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
          Length = 976

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 179 KSILQEKIPKEQEKIREFRKKHGSTKSE 262
           K +++EK P E++K  E +KKH S K++
Sbjct: 109 KKVIKEKDPSEKKKDGESKKKHRSEKAK 136


>SB_15503| Best HMM Match : DUF217 (HMM E-Value=5.3)
          Length = 196

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 122 ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKSERSQLI 277
           AC    V  RG   +QTNL+ + +   P+E++     RK+  +++  R +++
Sbjct: 4   ACALDLVHDRGRRFDQTNLRPMAEVSFPRERQPSEIQRKEASASRETRGRVL 55


>SB_5503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 303 DSTHATVHHINCDLSDLVEPCF 238
           DS  + VHHI  DL++ +E CF
Sbjct: 57  DSRGSPVHHIEADLANRLEDCF 78


>SB_42142| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
          Length = 265

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 122 ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKSER 265
           AC    V  RG   +QTNL+ + +   P+E +   E ++K  S   ER
Sbjct: 4   ACALDLVHDRGRRFDQTNLRPMAEVSFPRELQP-SEIQRKEASASRER 50


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 194 EKIPKEQEKIREFRKKHGSTKSE 262
           E+I   QEKI+E RK +GS K+E
Sbjct: 924 ERIRLLQEKIKEMRKLYGSLKAE 946


>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 361 GLSIPECQQQLPKAKGGEEPLPEVFSGFSSLA 456
           GL IP CQ  + +    E+  P+ +SG+ S+A
Sbjct: 439 GLEIPGCQPGVSQGYQQEQGYPQGYSGYPSMA 470


>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 304 KGLVWETSVLDADEGIRFRGLSIPECQQQL 393
           +GL W+ S  D D    FRGL+IP C  ++
Sbjct: 178 RGLPWQAS--DQDVANFFRGLNIPSCVSRM 205


>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = +2

Query: 17  RSRASCRDLCGSLRSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQE 196
           RSRAS R L   L S+ + +++     S       +C TA++      A Q+ +  + +E
Sbjct: 402 RSRASWRRLTDVLGSSMVSLSVATTPCSSWARFVFSCMTASISATDPIASQSVISHVSRE 461

Query: 197 KIPK-----EQEKIREFRKKHGSTKSERSQ 271
           +  +     + E +R+ R K G   +  ++
Sbjct: 462 REDRLEQGIQSENMRKLRSKAGDKATSNAK 491


>SB_30360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 315 NQTFDSTHATVHHINCDLSDLVEPCFFRNSRIFSCSLGI 199
           NQTFD  HAT   ++   +D    C+++N R     +GI
Sbjct: 36  NQTFDVIHATKSGMSILRNDQYRICWYQNKRNRRVIIGI 74


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 80  LFRITSSRLVELQKACPTA-TVLLRGLSAEQTNLKSILQEKIPKEQEKIR 226
           L +    R+ EL+ A   A + +  G+ A++ + K++  EKI KE+EK++
Sbjct: 297 LIQTLQKRIKELESAGTQAGSKIDTGMGAKRKDSKAVDPEKIAKEKEKLQ 346


>SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 264

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -3

Query: 198 FSWRILFKFVC----SALRPRSRTVAVGHAFCNSTSLEDVIL 85
           F W +L  FV     S + PRSR    G   C STS+  ++L
Sbjct: 135 FDWMLLTCFVIDKLESMITPRSRAAWAGLMKCPSTSISGIML 176


>SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 50  SLRSAALKMALFRITSSRLVELQKACPTATVLLR 151
           SLR A+ ++   RI S  +V L+KA     +LLR
Sbjct: 33  SLRKASERVVNLRIASESMVNLRKASERMVILLR 66


>SB_16423| Best HMM Match : ATE_C (HMM E-Value=0.00015)
          Length = 192

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 344 KESVSVVYPSLSAN-SNCPRLRVEKNHYPKSFLASRHWRY 460
           KES SV Y  +     +CP++R + N+YP   +    +R+
Sbjct: 60  KESASVQYYYMGFYIHSCPKMRYKGNYYPSYLVCPETYRW 99


>SB_25729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 294 HATVHHI--NCDLSDLVEPCFFRNSRIFSCSLGIFSWRI 184
           H+T+++I  N  +SD++ P F    +I   S G   WR+
Sbjct: 37  HSTINYIIVNIAVSDVLVPVFALTRQIIELSSGSLVWRV 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,027,948
Number of Sequences: 59808
Number of extensions: 426184
Number of successful extensions: 1349
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)