Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060132.seq
(686 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047042-1|AAC25560.1| 466|Homo sapiens citrate synthase protein. 126 7e-29
BC072016-1|AAH72016.1| 466|Homo sapiens citrate synthase protein. 124 2e-28
BC010106-1|AAH10106.1| 466|Homo sapiens CS protein protein. 124 2e-28
BC000105-1|AAH00105.3| 409|Homo sapiens CS protein protein. 124 2e-28
AK074956-1|BAC11314.1| 466|Homo sapiens protein ( Homo sapiens ... 124 2e-28
AF053631-1|AAQ13428.1| 466|Homo sapiens citrate synthase protein. 124 2e-28
>AF047042-1|AAC25560.1| 466|Homo sapiens citrate synthase protein.
Length = 466
Score = 126 bits (304), Expect = 7e-29
Identities = 70/130 (53%), Positives = 85/130 (65%)
Frame = +1
Query: 256 VGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVF 435
VG++TVDMMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 60 VGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGL 119
Query: 436 SGFSSLAIYPPKRK*SAV*RMGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTATSTV 615
P + + S + + + +N P LHPMSQ L AAVTA ++
Sbjct: 120 FWLLVTGCIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQ-LSAAVTALNSE 178
Query: 616 NLNFXKXYFR 645
+ NF + Y R
Sbjct: 179 S-NFAQAYAR 187
Score = 45.2 bits (102), Expect = 2e-04
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +2
Query: 74 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 253
MAL + L +C + R SA TNLK IL + IPKEQ +I+ FR++HG T
Sbjct: 1 MALLTAAARLLGTKNASC--LVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKT 58
>BC072016-1|AAH72016.1| 466|Homo sapiens citrate synthase protein.
Length = 466
Score = 124 bits (300), Expect = 2e-28
Identities = 69/128 (53%), Positives = 84/128 (65%)
Frame = +1
Query: 256 VGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVF 435
VG++TVDMMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 60 VGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGL 119
Query: 436 SGFSSLAIYPPKRK*SAV*RMGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTATSTV 615
P + + S + + + +N P LHPMSQ L AAVTA ++
Sbjct: 120 FWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQ-LSAAVTALNSE 178
Query: 616 NLNFXKXY 639
+ NF + Y
Sbjct: 179 S-NFARAY 185
Score = 45.2 bits (102), Expect = 2e-04
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +2
Query: 74 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 253
MAL + L +C + R SA TNLK IL + IPKEQ +I+ FR++HG T
Sbjct: 1 MALLTAAARLLGTKNASC--LVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKT 58
>BC010106-1|AAH10106.1| 466|Homo sapiens CS protein protein.
Length = 466
Score = 124 bits (300), Expect = 2e-28
Identities = 69/128 (53%), Positives = 84/128 (65%)
Frame = +1
Query: 256 VGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVF 435
VG++TVDMMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 60 VGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGL 119
Query: 436 SGFSSLAIYPPKRK*SAV*RMGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTATSTV 615
P + + S + + + +N P LHPMSQ L AAVTA ++
Sbjct: 120 FWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQ-LSAAVTALNSE 178
Query: 616 NLNFXKXY 639
+ NF + Y
Sbjct: 179 S-NFARAY 185
Score = 45.2 bits (102), Expect = 2e-04
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +2
Query: 74 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 253
MAL + L +C + R SA TNLK IL + IPKEQ +I+ FR++HG T
Sbjct: 1 MALLTAAARLLGTKNASC--LVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKT 58
>BC000105-1|AAH00105.3| 409|Homo sapiens CS protein protein.
Length = 409
Score = 124 bits (300), Expect = 2e-28
Identities = 69/128 (53%), Positives = 84/128 (65%)
Frame = +1
Query: 256 VGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVF 435
VG++TVDMMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 3 VGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGL 62
Query: 436 SGFSSLAIYPPKRK*SAV*RMGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTATSTV 615
P + + S + + + +N P LHPMSQ L AAVTA ++
Sbjct: 63 FWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQ-LSAAVTALNSE 121
Query: 616 NLNFXKXY 639
+ NF + Y
Sbjct: 122 S-NFARAY 128
>AK074956-1|BAC11314.1| 466|Homo sapiens protein ( Homo sapiens
cDNA FLJ90475 fis, clone NT2RP3002721, highly similar to
Porcine citrate synthase mRNA. ).
Length = 466
Score = 124 bits (300), Expect = 2e-28
Identities = 69/128 (53%), Positives = 84/128 (65%)
Frame = +1
Query: 256 VGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVF 435
VG++TVDMMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 60 VGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGL 119
Query: 436 SGFSSLAIYPPKRK*SAV*RMGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTATSTV 615
P + + S + + + +N P LHPMSQ L AAVTA ++
Sbjct: 120 FWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQ-LSAAVTALNSE 178
Query: 616 NLNFXKXY 639
+ NF + Y
Sbjct: 179 S-NFARAY 185
Score = 45.2 bits (102), Expect = 2e-04
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +2
Query: 74 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 253
MAL + L +C + R SA TNLK IL + IPKEQ +I+ FR++HG T
Sbjct: 1 MALLTAAARLLGTKNASC--LVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKT 58
>AF053631-1|AAQ13428.1| 466|Homo sapiens citrate synthase protein.
Length = 466
Score = 124 bits (300), Expect = 2e-28
Identities = 69/128 (53%), Positives = 84/128 (65%)
Frame = +1
Query: 256 VGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVF 435
VG++TVDMMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 60 VGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGL 119
Query: 436 SGFSSLAIYPPKRK*SAV*RMGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTATSTV 615
P + + S + + + +N P LHPMSQ L AAVTA ++
Sbjct: 120 FWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQ-LSAAVTALNSE 178
Query: 616 NLNFXKXY 639
+ NF + Y
Sbjct: 179 S-NFARAY 185
Score = 45.2 bits (102), Expect = 2e-04
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +2
Query: 74 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 253
MAL + L +C + R SA TNLK IL + IPKEQ +I+ FR++HG T
Sbjct: 1 MALLTAAARLLGTKNASC--LVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKT 58
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,236,268
Number of Sequences: 237096
Number of extensions: 2011772
Number of successful extensions: 5798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5780
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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