Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060132.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical pr...   109   2e-24
AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical ...    31   0.77 
AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical ...    31   0.77 
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   2.4  
Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical p...    28   5.4  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna pol...    27   9.5  
AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymeras...    27   9.5  

>Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical
           protein T20G5.2 protein.
          Length = 468

 Score =  109 bits (261), Expect = 2e-24
 Identities = 59/117 (50%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
 Frame = +1

Query: 256 VGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVF 435
           V  V +DM+YGGMR +KG+V ETSVLD +EGIRFRG SIPECQ+ LPKAKGGEEPLPE  
Sbjct: 62  VQNVNIDMIYGGMRSMKGMVTETSVLDPEEGIRFRGYSIPECQKLLPKAKGGEEPLPEAI 121

Query: 436 SGFSSLAIYPPKRK*SAV*R-MGGEAELTGLT*XQC*NNMPGKLHPMSQFLRAAVTA 603
                    P + + +A+ +     A+L      +  +N P  LHPM+QF+ AA+ A
Sbjct: 122 WWLLCTGDVPSEAQTAAITKEWNARADLPTHV-VRMLDNFPDNLHPMAQFI-AAIAA 176



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +2

Query: 74  MALFRITSSRLVELQKACPTATVLLRGLSAE-QTNLKSILQEKIPKEQEKIREFRKKHGS 250
           MA+ R+ +  ++ + +  P +T      SAE  TNLK +L +KIP    K++ FR +HGS
Sbjct: 6   MAIRRLITKGVIPVCQVAPLST------SAEGSTNLKEVLSKKIPAHNAKVKSFRTEHGS 59

Query: 251 T 253
           T
Sbjct: 60  T 60


>AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8b protein.
          Length = 474

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +2

Query: 77  ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 241
           ++F I S+   +  +     TV + G+S    NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302


>AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8a protein.
          Length = 536

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +2

Query: 77  ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 241
           ++F I S+   +  +     TV + G+S    NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 128  PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 241
            PT+T+ L  L   + NL S+  E+  K +EKI + R++
Sbjct: 2424 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2461



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 128  PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 241
            PT+T+ L  L   + NL S+  E+  K +EKI + R++
Sbjct: 2482 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2519


>Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical
           protein C44C10.11 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 155 LSAEQTNLKSILQEKIPKEQEKIREFRKKH 244
           L+ E  NLK  L++K   E + I E +KKH
Sbjct: 318 LTEENHNLKEQLKQKTDAETKMIAEMKKKH 347


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 165 SALRPRSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLP-HK 40
           S  R +S+TVA  H +CN+    + +L  AI +  ++K P HK
Sbjct: 34  SGFRRKSKTVAFFHPYCNAGGGGERVLWAAI-RTMQKKFPDHK 75


>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
           protein T21B10.3 protein.
          Length = 1170

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 389 CCWHSG-MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVT 264
           C W S  +  P+K++PS    T   Q      ++ P  +STV+
Sbjct: 585 CSWFSSSLQNPKKQVPSGVYKTIAEQHLDEFEQIKPEEVSTVS 627


>AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna
           polymerase eta) homologprotein 1 protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 219 FSCSLGIFSWRILFKFVCSALRPRSRTV 136
           F CS G+ + +++ K VC+  +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236


>AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymerase
           eta protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 219 FSCSLGIFSWRILFKFVCSALRPRSRTV 136
           F CS G+ + +++ K VC+  +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,149
Number of Sequences: 27780
Number of extensions: 308834
Number of successful extensions: 905
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)