Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060132.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   3.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.3  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +3

Query: 411 RRTTTRSLFWLLVTGDIPTEAQVKRCLKNGRRGGANR 521
           RR T   L W      I   A   RCL   R+GG+ R
Sbjct: 60  RRVTCDVLSWQSKWLSINHSACAIRCLAQRRKGGSCR 96


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 321 FPNQTFDSTHATVHHINCDLSDLVE 247
           F + T+D     + HIN ++ D VE
Sbjct: 163 FGSWTYDGIQIDLKHINQNMGDKVE 187


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 521 GSRXTNVETICPANCIPCRSFF 586
           G+  T  ET  P++C+ C++FF
Sbjct: 181 GNEHTYSET-GPSHCVVCQNFF 201


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 210 SLGIFSWRILFK 175
           SLGI +W++LF+
Sbjct: 239 SLGIVAWQMLFR 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,819
Number of Sequences: 438
Number of extensions: 3890
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)