Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060131.seq
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    27   0.19 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.59 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.59 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.59 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.59 
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    24   1.4  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   5.5  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   5.5  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   7.3  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   7.3  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 249 CRLIIFYIVSRKRR*LLVHTVTVHLCFFS 163
           CR++ ++I++     +L  +VT+H+CF S
Sbjct: 38  CRILKYFIIAIYVLTILTSSVTLHVCFNS 66


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 399 VIPTGAGSQDALLLVITQIII-KNTMFCLLDVGRKK 295
           V+ +G  S+  LL + +Q+   K T+FC  D+GR+K
Sbjct: 82  VLGSGVISKGTLLFMTSQLKPDKVTVFCNRDLGREK 117


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 399 VIPTGAGSQDALLLVITQIII-KNTMFCLLDVGRKK 295
           V+ +G  S+  LL + +Q+   K T+FC  D+GR+K
Sbjct: 82  VLGSGVISKGTLLFMTSQLKPDKVTVFCNRDLGREK 117


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 399 VIPTGAGSQDALLLVITQIII-KNTMFCLLDVGRKK 295
           V+ +G  S+  LL + +Q+   K T+FC  D+GR+K
Sbjct: 82  VLGSGVISKGTLLFMTSQLKPDKVTVFCNRDLGREK 117


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 399 VIPTGAGSQDALLLVITQIII-KNTMFCLLDVGRKK 295
           V+ +G  S+  LL + +Q+   K T+FC  D+GR+K
Sbjct: 82  VLGSGVISKGTLLFMTSQLKPDKVTVFCNRDLGREK 117


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 411 IDRAVIPTGAGSQDALLLVITQIIIKNTMFCLLDVGRKKP 292
           ++  VIP      D L     + ++KN + CLLD GR  P
Sbjct: 17  LEEYVIPDNIDIDDILS---NERLLKNYVNCLLDKGRCTP 53


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 127 TKKNKKKRQVSNRLCEVHKH 68
           TK   K+    N++C +H H
Sbjct: 492 TKGTNKQLNTLNKICALHHH 511


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 127 TKKNKKKRQVSNRLCEVHKH 68
           TK   K+    N++C +H H
Sbjct: 217 TKGTNKQLNTLNKICALHHH 236


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 342 IIKNTMFCLLDVGRKKP 292
           ++KN + CLLD G+  P
Sbjct: 40  LLKNYVNCLLDRGKCSP 56


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 342 IIKNTMFCLLDVGRKKP 292
           ++KN + CLLD G+  P
Sbjct: 40  LLKNYVNCLLDRGKCSP 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,018
Number of Sequences: 336
Number of extensions: 3725
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)