Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060131.seq
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.48 
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.85 
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.6  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   7.9  

>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = -1

Query: 232 LYCFPKTKMIVGAHSNSSFVLL*LQQHVMSGKFESTKKN--KKKRQVSNRLCEVHKHHDL 59
           ++CFPKT   +GA     F  +  Q+ ++    E T+KN    ++ +++ +  V KH++ 
Sbjct: 113 MFCFPKTSKNIGAFVEKRFPAIRKQRMLV---LEQTQKNIQNAQKSMTSAVEGVQKHYE- 168

Query: 58  NAYFEI*G 35
           NA  +I G
Sbjct: 169 NAVKKIKG 176


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 187 YCVHQQSSS---FSGNNIKYYQPTYVTIRYRPAKLTINRFFSANIQ*TKHCVL 336
           Y VH  +S    F+  NI Y  P +  + YRP    ++     N    KHC+L
Sbjct: 116 YFVHYSNSPIEPFAKPNISYVNPQWNELDYRPDSQKLSPGKEKNTLDLKHCLL 168


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 489 SLNSRFYS-ITAAPSFKPKRSTFSRQK-IDRAVIPT-GAGSQD 370
           +LN   Y+ +T  P   PKR T+SR   +  A +P  G GS D
Sbjct: 416 NLNQPNYANLTPTPQVSPKRPTYSRSSPLPSASVPALGDGSPD 458


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 340 NKEHNVLFTGCWQKKTDLW 284
           N +H +L  GC Q   ++W
Sbjct: 192 NSKHGILVVGCGQSAAEIW 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,873
Number of Sequences: 5004
Number of extensions: 57676
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)