Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060131.seq
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836...    29   4.7  
07_03_1318 - 25751123-25751392,25751494-25751757,25752930-257530...    28   6.2  
05_03_0289 - 11688733-11691342                                         28   8.2  

>01_01_1060 -
           8363272-8365912,8366375-8366443,8366479-8366843,
           8367403-8367550,8367630-8367873,8368105-8368407,
           8368639-8368851,8368927-8369002,8369533-8369561,
           8369610-8369984,8371784-8371927,8374053-8374086
          Length = 1546

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 690 LNVGEGYLYHESIDSGTQLTRQWYKSNPYIR 598
           LNVG  Y+   S DSG  LTR WY   P+++
Sbjct: 893 LNVGGAYI-PPSNDSG--LTRPWYDDTPFVQ 920


>07_03_1318 -
           25751123-25751392,25751494-25751757,25752930-25753062,
           25753698-25753771,25753869-25753994
          Length = 288

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 160 QQHVMSGKFESTKKNKKKRQVSNRLCEVHKHHDLNA 53
           +Q  +SG  +S  ++K KRQ+SN   +    HD+ A
Sbjct: 140 KQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFA 175


>05_03_0289 - 11688733-11691342
          Length = 869

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 690 LNVGEGYLYHESIDSGTQLTRQWYKSNPYI 601
           LNVG  Y+   + DSG  L+R WY   PYI
Sbjct: 224 LNVGGSYVAPTN-DSG--LSRDWYDDTPYI 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,075
Number of Sequences: 37544
Number of extensions: 338226
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)