Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060131.seq
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ...    29   6.1  

>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
           protein.
          Length = 1006

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +2

Query: 236 IINLHTSLLDIGLQNSP*I---GFFLPTSSKQ--NIVFFIIICVITSSKASCEPAPVGIT 400
           I+  H  LL  G+Q +  +    +F P S  Q  NI+    +C +  S+      P  +T
Sbjct: 701 ILQSHEKLLHPGIQKTKKLFSENYFFPNSQLQIQNIINECQVCNLAKSEHRNTKVPFKLT 760

Query: 401 ALSIFCREK 427
               FCR+K
Sbjct: 761 PSIEFCRDK 769


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,173,060
Number of Sequences: 53049
Number of extensions: 605700
Number of successful extensions: 1283
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)