Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060131.seq
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77630.1 68414.m09038 peptidoglycan-binding LysM domain-conta...    28   5.2  
At1g21880.2 68414.m02739 peptidoglycan-binding LysM domain-conta...    27   9.0  
At1g21880.1 68414.m02738 peptidoglycan-binding LysM domain-conta...    27   9.0  

>At1g77630.1 68414.m09038 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 423

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 347 CVITSSKASCEPAPVGITALSIFCREKVLRFG 442
           CV+ S    CEPA + ++  S+ CR      G
Sbjct: 253 CVLGSRSMYCEPASISVSCSSMRCRNSNFMLG 284


>At1g21880.2 68414.m02739 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 416

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 347 CVITSSKASCEPAPVGITALSIFCREKVLRFG 442
           C + S    CEPA + ++  S+ CR   L  G
Sbjct: 256 CALGSRNLYCEPASLAVSCSSMQCRNSNLMLG 287


>At1g21880.1 68414.m02738 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 316

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 347 CVITSSKASCEPAPVGITALSIFCREKVLRFG 442
           C + S    CEPA + ++  S+ CR   L  G
Sbjct: 256 CALGSRNLYCEPASLAVSCSSMQCRNSNLMLG 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,480,183
Number of Sequences: 28952
Number of extensions: 288750
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)