Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060130.seq
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049874B Cluster: hypothetical protein 95.t00026; ...    37   0.52 
UniRef50_Q8HQJ1 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    36   0.69 
UniRef50_Q7R9P1 Cluster: Putative uncharacterized protein PY0682...    35   1.6  
UniRef50_A0CJ66 Cluster: Chromosome undetermined scaffold_193, w...    33   6.4  
UniRef50_A2GA52 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  
UniRef50_A0DY25 Cluster: Chromosome undetermined scaffold_69, wh...    33   8.4  

>UniRef50_UPI000049874B Cluster: hypothetical protein 95.t00026;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 95.t00026 - Entamoeba histolytica HM-1:IMSS
          Length = 989

 Score = 36.7 bits (81), Expect = 0.52
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = +3

Query: 381 NYVSVLLVENSCSKTNFMFIILNQSNLFLTRLHKICISSFFLXLYSILNNEHLKLDI 551
           N VSVL  + + S    +FI++++   FL RL  +  ++ F  + SI+NN   ++D+
Sbjct: 201 NIVSVLKKQPNLSPEEKLFILISEKLTFLKRLSTVSTATCFTDVCSIVNNSLFQIDV 257


>UniRef50_Q8HQJ1 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=6; Ixodes|Rep: NADH-ubiquinone oxidoreductase chain 2
           - Ixodes persulcatus (Taiga tick)
          Length = 323

 Score = 36.3 bits (80), Expect = 0.69
 Identities = 22/59 (37%), Positives = 32/59 (54%)
 Frame = +3

Query: 336 ALIVLSHGFFSY*LINYVSVLLVENSCSKTNFMFIILNQSNLFLTRLHKICISSFFLXL 512
           ALI  +H F+   L  Y  +L+      K N+ F I N +++ LT L+KI + S FL L
Sbjct: 177 ALIFSNHNFWMLYLFIYSIILMKIIKTFKKNYNFSIFNLNSMKLTFLNKITMISLFLSL 235


>UniRef50_Q7R9P1 Cluster: Putative uncharacterized protein PY06820;
           n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY06820 - Plasmodium yoelii yoelii
          Length = 761

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 619 FNYWLFYKVVNIKKER---CFDFKNKISSFKCSLFKMLYXFKKKEEIHILCNLVKKRLL* 449
           FNY   Y   N+  +R     D+K K+ +   SL K+LY    K  I I   + KK    
Sbjct: 680 FNYTSLYSNFNVFYKRNIEILDYKTKVGN---SLIKLLYSISYKHNISIFYKICKKIEYI 736

Query: 448 FNIINMKF 425
           +N +N+ F
Sbjct: 737 YNYLNLSF 744


>UniRef50_A0CJ66 Cluster: Chromosome undetermined scaffold_193,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_193,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 119

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = -3

Query: 616 NYWLFYKVVNIKKERCFDFKNKISSFKCSLFKMLYXFKKKEEIHILCNLVKKRLL*FNII 437
           N+ +FY  +N++      F +K + + CS     Y   +   IHIL +  KK+ L F++I
Sbjct: 23  NFVIFY--LNLRMLPFKIFNSKSNQYFCSKITEFYLINEINFIHILFSDTKKKKLVFHLI 80

Query: 436 NMKFVLEH 413
           +  F L +
Sbjct: 81  SKNFKLNN 88


>UniRef50_A2GA52 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 278

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 634 LPTXKFNYWLFYKVVNIKKERCFDFKNKISSFKCSLFKMLYXFKKKE 494
           +P+    Y +F+ + +  +    DF N++S+    L   +Y F+KKE
Sbjct: 34  IPSENNKYSIFFNIKSENQTNIIDFVNQLSNANLGLCSHIYIFRKKE 80


>UniRef50_A0DY25 Cluster: Chromosome undetermined scaffold_69, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_69,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2823

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 571 CFDFKNKISSFKCSLFKMLYXFKKKEEIHILCNLVKKRLL 452
           CF+F+   S  +C+L+K    F   E I I C L K+  +
Sbjct: 675 CFEFQQNESQIRCTLYKDFEEFINDERIQIGCALCKENYI 714


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,328,603
Number of Sequences: 1657284
Number of extensions: 10411611
Number of successful extensions: 21432
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21410
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)