Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060130.seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.82 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   4.4  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   7.6  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   7.6  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    25   7.6  

>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 607 LFYKVVNIKKERCFDFKNKI 548
           +F+K+++IK  R FDF N I
Sbjct: 9   IFFKIIHIKSSRKFDFSNAI 28


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 565 DFKNKISSFKCSLFKMLYXFKKKEEIHILC 476
           +F+N+I + + S+ +ML  F+ K ++ +LC
Sbjct: 791 EFENEIEAERESMHQMLETFRIKADVVVLC 820


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 624 KSSIIGSSTKLST*KRNAVLISKTRYQVLNVRCLKCYTXLKKKRKYIFCAILL 466
           K S + SS + S+ + +   I  T  +VL V  ++     +KK +YI+ A+ L
Sbjct: 23  KRSAVSSSLEFSSYEESNSPIENT--EVLKVSEIEAKKRRRKKHRYIYLAVCL 73


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +3

Query: 342 IVLSHGFFSY*LINYVSVLLVENSCSKTNFMFIILNQSNLFLTRLHKICISSFFLXLYSI 521
           I LS+ FF +  +   S+ L+ +       +F  L+  N  L+ LH IC++S FL L   
Sbjct: 24  ISLSNSFFPHSFMFVKSLHLMTSQ-----HIFKCLSSCNYALSILHNICLAS-FLYLSKC 77

Query: 522 LNNEHLKLDIL--FLKSKQRSF 581
             + H+   +   F KS   ++
Sbjct: 78  YYHTHILTSVRLDFCKSHAHTY 99


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 580 KERCFDFKNKISSFKCSLFKMLYXFKKKEEIHILCNLVK 464
           K R F  +N+I++ KC   K L+    ++  HI C   K
Sbjct: 269 KRRRFLERNRIAASKCRQKKKLWTQNLEKTAHIACEQSK 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,226
Number of Sequences: 5004
Number of extensions: 49419
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)