Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060130.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0033 + 9865963-9866090,9868173-9868253,9868358-9868375,986...    28   7.9  

>10_06_0033 +
           9865963-9866090,9868173-9868253,9868358-9868375,
           9869257-9869374,9869724-9869795,9870049-9870066,
           9870231-9870551,9870652-9870760,9871562-9871736,
           9871761-9871828,9873147-9873227,9873541-9873767
          Length = 471

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 156 FRRRGIASCTSIVNFASTATSRQIKH**VSCFVDFRFCL 272
           +R+  IASCT  ++ A+ + SR I +   SC V  +  L
Sbjct: 43  WRQGFIASCTRFLSAANASASRSISYACFSCLVRLKIML 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,794,981
Number of Sequences: 37544
Number of extensions: 252554
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)