Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060130.seq
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)                 28   6.0  
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)                  28   8.0  

>SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)
          Length = 222

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 221 STCGRRGKVDYGCATRDSSPPKHLSLNCLYQ 129
           S C  RG   Y C  RDS  PK  + N  Y+
Sbjct: 171 SQCNTRGHTAYSCRARDSRIPKPRNQNPNYR 201


>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
          Length = 297

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 552 RYQVLNVRCLKCYTXLKKKRKYIFC 478
           RY+   +RCL+C+   KK+ K + C
Sbjct: 250 RYKKYRIRCLRCWYIPKKEEKALPC 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,175,657
Number of Sequences: 59808
Number of extensions: 324257
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)