Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060130.seq
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-9|CAB03174.2|  183|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z29116-3|CAA82372.1|  485|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U20902-1|AAA84393.1|  485|Caenorhabditis elegans cyclin A protein.     28   7.0  
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    28   7.0  

>Z81097-9|CAB03174.2|  183|Caenorhabditis elegans Hypothetical
           protein K07A1.1 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 601 YKVVNIKKERCFDFKNKISSFKCSLFKMLY---XFKKKEEIHILCNL-VKKRLL*FNIIN 434
           + +VN   E C D K ++S+  C +F  L     F KK E  + C L +  ++L + ++ 
Sbjct: 6   FLIVNESIEECVDRKLQVSTENCDVFPALVYIPKFTKKMEKGMFCVLTIMAQILIYGVMG 65

Query: 433 MKF 425
             F
Sbjct: 66  YFF 68


>Z29116-3|CAA82372.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK507.6 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = -3

Query: 613 YWLFYKVVNIKKERCFDFKNKISS-FKCSLFKML------YXFKKKEEIHILCNLVKKRL 455
           Y L  +  N     CFD +++++   +  L          Y F+K E  H+  +LV + L
Sbjct: 219 YMLHRQTKNRASHECFDIQSQVNEEMRTILIDWFSDVVKEYNFQK-ETFHLAVSLVDRAL 277

Query: 454 L*FNIINMKFVL 419
             FNI  M+F L
Sbjct: 278 SMFNIDKMRFQL 289


>U20902-1|AAA84393.1|  485|Caenorhabditis elegans cyclin A protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = -3

Query: 613 YWLFYKVVNIKKERCFDFKNKISS-FKCSLFKML------YXFKKKEEIHILCNLVKKRL 455
           Y L  +  N     CFD +++++   +  L          Y F+K E  H+  +LV + L
Sbjct: 219 YMLHRQTKNRASHECFDIQSQVNEEMRTILIDWFSDVVKEYNFQK-ETFHLAVSLVDRAL 277

Query: 454 L*FNIINMKFVL 419
             FNI  M+F L
Sbjct: 278 SMFNIDKMRFQL 289


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 548 YLVFEIKTAFLFYVDNFVEEPII--ELXGWQCKSLLYRAIFY 667
           Y++  IK  F F ++   E+P++  EL GW+  + +    FY
Sbjct: 167 YVILIIKNFFFFLMEVINEDPVVELELTGWEWINYIPYVPFY 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,138,632
Number of Sequences: 27780
Number of extensions: 273025
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)