Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060129.seq
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q84EX0 Cluster: Putative resolvase; n=1; Lactobacillus ...    35   2.1  
UniRef50_A0TJF9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_Q4ST59 Cluster: Chromosome undetermined SCAF14300, whol...    33   4.9  
UniRef50_Q8KEN4 Cluster: Transcription-repair coupling factor; n...    33   4.9  
UniRef50_Q6FJ34 Cluster: Similar to sp|P38170 Saccharomyces cere...    33   6.4  

>UniRef50_Q84EX0 Cluster: Putative resolvase; n=1; Lactobacillus
           fermentum|Rep: Putative resolvase - Lactobacillus
           fermentum
          Length = 192

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 13/35 (37%), Positives = 25/35 (71%)
 Frame = +3

Query: 378 SEKQNRGYAFPVENVVKRACAATGLSESTIKRIKR 482
           +++  + Y + +E+ ++    ATG+SEST+KRI+R
Sbjct: 151 TDRYRKIYDYSLEHSIRETALATGVSESTVKRIRR 185


>UniRef50_A0TJF9 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia ambifaria MC40-6|Rep: Putative
           uncharacterized protein - Burkholderia ambifaria MC40-6
          Length = 232

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 239 TGTRPQPARASAACTGRTKASSRQEKKRGDR---WPSPRTHL*GHKIFRKRKTEQR 397
           TG +P+P R    C  R +A SRQ + RGD     P PR  L  H   R+R   QR
Sbjct: 160 TGWQPRPVRPEQ-CAARPQAGSRQREMRGDHAAGGPRPRGRL--HDDGRERARMQR 212


>UniRef50_Q4ST59 Cluster: Chromosome undetermined SCAF14300, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF14300,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 737

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 248 RPQPARASAACTGRTKASSRQEKKRGDRWPSPR 346
           RP P R+ AAC GR+  +S        RWP+PR
Sbjct: 615 RPDPGRSCAACCGRSPVTS-ATWATSPRWPTPR 646


>UniRef50_Q8KEN4 Cluster: Transcription-repair coupling factor;
           n=10; Chlorobiaceae|Rep: Transcription-repair coupling
           factor - Chlorobium tepidum
          Length = 1113

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +3

Query: 315 KKEAIDGQARELIYKVIKFFESEKQNRGYAFPVENVVKRACAATGLSESTIKRIK 479
           KKE +  + R++  K+I+ +   K   G+AF  +++ +R   A+ + E T  ++K
Sbjct: 500 KKERVRKKLRDIAAKLIRVYAKRKMTPGFAFGPDSIFQREFEASFMFEETPDQLK 554


>UniRef50_Q6FJ34 Cluster: Similar to sp|P38170 Saccharomyces
           cerevisiae YBL097w; n=1; Candida glabrata|Rep: Similar
           to sp|P38170 Saccharomyces cerevisiae YBL097w - Candida
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 751

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
 Frame = +3

Query: 327 IDGQARELIYKVIKFFESEKQNRGYA----FPVENVVKRACAATGLSESTIKRIKRDGLR 494
           +D     ++ K +  +  EK NR +     + V N  K+A      S      I+R+   
Sbjct: 398 LDSMLGSILEKDLMAYFDEKMNRNWRGREHWKVANY-KKANTIDNKSSEPNNEIEREATE 456

Query: 495 AEGTSTRMTGPKKRRVRKTKVQLDYFQL 578
           +EGTS        ++ RK ++Q+D+  L
Sbjct: 457 SEGTSEENKKSDTKKERKKQIQIDFLNL 484


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,719,500
Number of Sequences: 1657284
Number of extensions: 8505615
Number of successful extensions: 23989
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23985
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)