Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060129.seq
         (681 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118441-1|AAM48470.1|  961|Drosophila melanogaster SD06668p pro...    29   5.9  
AY051770-1|AAK93194.1| 1240|Drosophila melanogaster LD29802p pro...    29   5.9  
AF487677-1|AAM18044.1| 1240|Drosophila melanogaster vanaso protein.    29   5.9  
AF487674-1|AAM18043.1| 1240|Drosophila melanogaster vanaso protein.    29   5.9  
AE014297-3590|AAF56321.3|  961|Drosophila melanogaster CG6695-PA...    29   5.9  
AE014296-2669|AAF49517.1|  188|Drosophila melanogaster CG13071-P...    29   5.9  
AE014296-358|AAF47570.1| 1240|Drosophila melanogaster CG32315-PA...    29   5.9  

>AY118441-1|AAM48470.1|  961|Drosophila melanogaster SD06668p protein.
          Length = 961

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
 Frame = +2

Query: 293  KASSRQEKKRGDRWPSPRTH-------L*GHKIFRKRKTEQRLRFPSRKCREASVCRDRT 451
            ++SSR E++R  R PSP+ +         G ++ RKR++  R R  SR  R +   R ++
Sbjct: 834  RSSSRTERRRRTRTPSPKYNRRQRSRSRSGSRVERKRRSHSRRRSGSRDRRRSRSRRSQS 893

Query: 452  VR 457
             R
Sbjct: 894  RR 895


>AY051770-1|AAK93194.1| 1240|Drosophila melanogaster LD29802p
           protein.
          Length = 1240

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 342 RELIYKVIKFFESEKQNRGYAFPVE 416
           R+L YK +K +E    NRG+ FP E
Sbjct: 466 RDLFYKALKRWEVSHLNRGFNFPSE 490


>AF487677-1|AAM18044.1| 1240|Drosophila melanogaster vanaso protein.
          Length = 1240

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 342 RELIYKVIKFFESEKQNRGYAFPVE 416
           R+L YK +K +E    NRG+ FP E
Sbjct: 466 RDLFYKALKRWEVSHLNRGFNFPSE 490


>AF487674-1|AAM18043.1| 1240|Drosophila melanogaster vanaso protein.
          Length = 1240

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 342 RELIYKVIKFFESEKQNRGYAFPVE 416
           R+L YK +K +E    NRG+ FP E
Sbjct: 466 RDLFYKALKRWEVSHLNRGFNFPSE 490


>AE014297-3590|AAF56321.3|  961|Drosophila melanogaster CG6695-PA,
            isoform A protein.
          Length = 961

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
 Frame = +2

Query: 293  KASSRQEKKRGDRWPSPRTH-------L*GHKIFRKRKTEQRLRFPSRKCREASVCRDRT 451
            ++SSR E++R  R PSP+ +         G ++ RKR++  R R  SR  R +   R ++
Sbjct: 834  RSSSRTERRRRTRTPSPKYNRRQRSRSRSGSRVERKRRSHSRRRSGSRDRRRSRSRRSQS 893

Query: 452  VR 457
             R
Sbjct: 894  RR 895


>AE014296-2669|AAF49517.1|  188|Drosophila melanogaster CG13071-PA
           protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 404 SVASVLFFAFEKFYDLINEFAGLAIDRLFFFLADC 300
           S +S L FAF+KF+   N F    + +LF FLA C
Sbjct: 99  STSSTLSFAFQKFFSNQNRF---KMFKLFVFLAFC 130


>AE014296-358|AAF47570.1| 1240|Drosophila melanogaster CG32315-PA
           protein.
          Length = 1240

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 342 RELIYKVIKFFESEKQNRGYAFPVE 416
           R+L YK +K +E    NRG+ FP E
Sbjct: 466 RDLFYKALKRWEVSHLNRGFNFPSE 490


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,186,122
Number of Sequences: 53049
Number of extensions: 373655
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)