Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060129.seq
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine rece...    30   1.3  
U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine rece...    30   1.3  
AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical ...    30   1.3  
AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine re...    28   5.4  
AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical ...    28   5.4  

>U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform b protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 63  FTRNILTKQRIVLNRVSLHFKTLND---EYKRVRCVV 164
           FT +ILTK   +LN   L FKTL+     + R+ CV+
Sbjct: 109 FTPSILTKLYFLLNHYCLAFKTLSQIAISFNRMTCVI 145


>U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform a protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 63  FTRNILTKQRIVLNRVSLHFKTLND---EYKRVRCVV 164
           FT +ILTK   +LN   L FKTL+     + R+ CV+
Sbjct: 109 FTPSILTKLYFLLNHYCLAFKTLSQIAISFNRMTCVI 145


>AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical
           protein Y105C5A.11 protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 63  FTRNILTKQRIVLNRVSLHFKTLND---EYKRVRCVV 164
           FT +ILTK   +LN   L FKTL+     + R+ CV+
Sbjct: 109 FTPSILTKLYFLLNHYCLAFKTLSQIAISFNRMTCVI 145


>AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 21 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +3

Query: 63  FTRNILTKQRIVLNRVSLHFKTLND---EYKRVRCVV 164
           FT +I+TK    +N   L FKTL+     + R+ CV+
Sbjct: 107 FTPSIITKAYYTINHYMLAFKTLSQIAVSFNRMTCVI 143


>AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical
           protein Y34B4A.8 protein.
          Length = 604

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 534 RRVRKTKVQLDYFQLCALRSIVNGY 608
           + +R+  V LDYFQ   L  ++N Y
Sbjct: 75  QNLREASVDLDYFQTSCLHRVINAY 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,396,603
Number of Sequences: 27780
Number of extensions: 210231
Number of successful extensions: 638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)