Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060129.seq
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19460.1 68414.m02424 kelch repeat-containing F-box family pr...    29   2.8  
At1g12330.1 68414.m01425 expressed protein                             29   2.8  
At1g18460.1 68414.m02303 lipase family protein similar to triacy...    29   3.8  
At1g19470.1 68414.m02425 kelch repeat-containing F-box family pr...    27   8.7  

>At1g19460.1 68414.m02424 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 416

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 375 ESEKQNRGYAFPVENVVKRACAA 443
           E EK NR  +FP+ N +  AC A
Sbjct: 46  EEEKDNRSVSFPIPNELTEACVA 68


>At1g12330.1 68414.m01425 expressed protein
          Length = 505

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 239 TGTRPQPARASAACTGRTKASSRQEKKRGDRWPSPRTHL*GHKIFRKRKTEQ 394
           T   P+P+ A+AA   R+ +SS  +  R ++W      L  HK+ +  K ++
Sbjct: 143 TRRSPKPSSATAALPPRSSSSSAADASREEQWRLAVAEL-SHKLIQATKKKE 193


>At1g18460.1 68414.m02303 lipase family protein similar to
           triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
           {Canis familiaris} [SP|P80035]
          Length = 701

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 556 TLVFLTLLFLGPVIRVEVPSARKPSRFILLIV 461
           TL+  T LFLGPV+   VP+   P++F  +++
Sbjct: 483 TLMEYTFLFLGPVLSRIVPAFYIPTKFFRMLL 514


>At1g19470.1 68414.m02425 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 412

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 375 ESEKQNRGYAFPVENVVKRACAA 443
           E E+ NR  +FP+ N +  AC A
Sbjct: 46  EEEEDNRSVSFPIPNELTEACVA 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,453,975
Number of Sequences: 28952
Number of extensions: 187441
Number of successful extensions: 490
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)