Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060128.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    26   0.33 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 144 PSGT-PSMSPQKGSPASQPYTLNRN*TVAAVSSRRNSPHT 28
           PSG  P ++P  G P S PYT+  N   + +SS    P++
Sbjct: 110 PSGNVPPLTPSPGPP-SHPYTVISNGYSSPMSSGSYDPYS 148


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 179  NRKCFREGESRRAPSAGPMLP 241
            N +C  +  S  APS  PM+P
Sbjct: 2281 NTECHPDASSTMAPSTTPMVP 2301


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 346 ELLAVLNSSGA 314
           ELLA+L SSGA
Sbjct: 105 ELLAILGSSGA 115


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 346 ELLAVLNSSGA 314
           ELLA+L SSGA
Sbjct: 105 ELLAILGSSGA 115


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
 Frame = -2

Query: 153 PRCPSGTPSMSPQ----KGSPASQP 91
           PRCPSG   +S +    +G P   P
Sbjct: 96  PRCPSGESMLSERAALLRGVPTLSP 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,250
Number of Sequences: 336
Number of extensions: 3756
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)