Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060128.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    29   0.47 
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    26   5.8  

>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 281 CGTVREVRLSPPLPAAWVQRMALSCSRLHGNTSCLFVLSL 162
           CGT   V     +   W+  +AL+ SR +GNT  L  L L
Sbjct: 173 CGTQVFVGSGRSIDCQWMDSVALNLSRYYGNTEALSSLPL 212


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 604 GVTSLHNRLTVPSQSNRQTVTLFPHNTRQSRS 509
           G+TS  NR  + S +  +T    P+ TR++RS
Sbjct: 193 GITSTKNRYVIRSLNVDETGKTIPNITRENRS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,049
Number of Sequences: 5004
Number of extensions: 61178
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)