Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060128.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 30 2.0
02_05_1185 + 34812851-34813144,34813336-34813457,34814136-34814718 30 2.0
05_01_0447 + 3554146-3554183,3554295-3554608,3555201-3555328,355... 29 2.6
08_02_1019 - 23657175-23658047 29 4.5
07_01_0975 + 8223269-8224354 29 4.5
07_01_0446 - 3371829-3372132,3374691-3375673 28 7.9
07_01_0445 - 3365244-3366227 28 7.9
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 7.9
02_01_0746 + 5554686-5556179 28 7.9
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 604 GVTSLHNRLTVPSQSNRQTVTLFPHN-TRQSRSFVLKGSNYIMGTARIDVVFN 449
GV S N T PS +R+ LFP + S + + S+++ R DV+ +
Sbjct: 627 GVRSTENLFTTPSMDSRRAFALFPSECPKSSLTSSTRTSSHLHSPTRTDVLLS 679
>02_05_1185 + 34812851-34813144,34813336-34813457,34814136-34814718
Length = 332
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 635 PARAVTSALGWCNFTSQPPNGPVTIEQTNCHSISTQH 525
P VT G TS+PP P T T H I QH
Sbjct: 193 PMATVTVVSGAGGTTSRPPAAPATTTTTEQHKICLQH 229
>05_01_0447 +
3554146-3554183,3554295-3554608,3555201-3555328,
3555623-3555898,3556076-3556206,3556792-3556909,
3556980-3557072,3557649-3557723,3557813-3557890,
3558020-3558031
Length = 420
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 199 RREQESAIRWTHAAGSGGDRRTSRTVPHTYPSS 297
+R +A+ AAG GG RR+ R P TYP+S
Sbjct: 66 KRVPPAAVEEAAAAGGGGVRRSPRVFP-TYPTS 97
>08_02_1019 - 23657175-23658047
Length = 290
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 191 FREGESRRAPSAGPMLPVAAVIDAPRALFHIPTHHQL-P*IRSPAAVEHSQQ 343
F ES GP P +AV A + + HHQ P R+PA H QQ
Sbjct: 108 FHRKESESPTGVGPAEP-SAVSPAAISAYGASPHHQFSPYYRTPAGYLHHQQ 158
>07_01_0975 + 8223269-8224354
Length = 361
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = -2
Query: 273 SARGASITAATGSMGPADGALLLSPSRKHFLFICVEPGSTPR-----CPSGTPSMSPQKG 109
SA G S + TG G + G+ SPS P S+P P+G+P+ P G
Sbjct: 225 SAPGPSPSDDTG-YGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAG 283
Query: 108 SPASQP 91
PAS P
Sbjct: 284 GPASGP 289
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 72 NFYSMCMAVKLEIPSVVTLMEFRLDSAEYCQAQHK 176
NF++ C+ + E+P+VV ++RL A H+
Sbjct: 101 NFHAGCLRLAAELPAVVLSFDYRLAPEHRLPAAHE 135
>07_01_0445 - 3365244-3366227
Length = 327
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 48 GCSRLPPFNFYSMCMAVKLEIPSVVTLMEFRL 143
G R P NF++ C+ + E+P+VV ++RL
Sbjct: 90 GSGRWP--NFHAWCLRLAAELPAVVLSFDYRL 119
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 137 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 247
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
>02_01_0746 + 5554686-5556179
Length = 497
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 325 SSGAPNLR*LMMGRYVEQCARCVYHRRYRQHGSSGWRSP 209
SSGA +L L G Y+ A C++ HG + RSP
Sbjct: 403 SSGAADLPCLGTGDYIAAAAGCLFPPHLNLHGVTVSRSP 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,751,982
Number of Sequences: 37544
Number of extensions: 453861
Number of successful extensions: 1466
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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