Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060128.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)                29   2.7  
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           29   4.6  
SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03)                    28   8.1  

>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 474 LPALMSFSTTRTHPKAIKQKFRMWKQIKLNHSE 376
           LP  M   T +T PK + Q FR +KQ++  H +
Sbjct: 40  LPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKK 72


>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 210 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 103
           L++P  K+F++ CV PG++ R P+  PS++    +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241


>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -1

Query: 589 HNRLTVPSQSNRQTVTL---FPHNT 524
           HN +T+PSQ +R T+T+   + HNT
Sbjct: 252 HNTITIPSQYHRNTITIQSQYHHNT 276



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -1

Query: 589 HNRLTVPSQSNRQTVTL---FPHNT 524
           HN +T+PSQ N  T+T+   + HNT
Sbjct: 384 HNTITIPSQYNHNTITIPSQYHHNT 408


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -2

Query: 279 WNSARGASITAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 136
           W  AR   + A T ++ PAD +L+ SPSR      CV    T  C +G
Sbjct: 745 WGRAR-TLVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786


>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 171 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 85
           + P S P  PS +P+ +   GSP  QP++
Sbjct: 77  LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105


>SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03)
          Length = 407

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 226 WTHAAGSGGDRRTSRTVPHTYPSSVTLNSEPRCC*AQPTIQ 348
           W+   G+   +RT +T P+T    ++ +  P+ C  QP ++
Sbjct: 166 WSVTCGAASRKRTIKTTPYTV-QKLSCDGLPQTCSQQPEVE 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,355,004
Number of Sequences: 59808
Number of extensions: 523046
Number of successful extensions: 1516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)