Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060127.seq
         (663 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   3.9  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   3.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   3.9  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   5.2  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   5.2  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 100 TSPRSPQT*RVSSKASTPAVSVTSTPMRRLCFRLLKTSPLRRPRSLYS 243
           ++PRS      SS +     S  S+   ++  RLL  +P+      YS
Sbjct: 152 STPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSANQWYS 199


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 100 TSPRSPQT*RVSSKASTPAVSVTSTPMRRLCFRLLKTSPLRRPRSLYS 243
           ++PRS      SS +     S  S+   ++  RLL  +P+      YS
Sbjct: 143 STPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSANQWYS 190


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 376 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVT 483
           +H  E + +V+EEP     R    +  LNH+  +VT
Sbjct: 40  THNNEMYHSVKEEPIYESCRFSINQPYLNHFDNSVT 75


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 376 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVT 483
           +H  E +  V+EEP     R    +  LNH+  +VT
Sbjct: 40  THNNEMYHRVKEEPIYESCRFSINQPYLNHFDNSVT 75


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 376 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVT 483
           +H  E +  V+EEP     R    +  LNH+  +VT
Sbjct: 40  THNNEMYHRVKEEPIYESCRFSINQPYLNHFDNSVT 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,943
Number of Sequences: 336
Number of extensions: 2949
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)