Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060127.seq
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.26
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.4
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.4
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.2
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.2
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 3.2
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.2
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 7.4
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.4
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.4
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.4
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 7.4
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.4
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.4
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 7.4
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +1
Query: 268 PAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 432
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 36 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 215
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 216 TEKTQKSLFDGI 251
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 302 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 421
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 326 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 457
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 220 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 89
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +2
Query: 239 IRRYREFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETC 406
+ R + + +H E+ E P+ ++ + EKEK+ + +E+ P H T
Sbjct: 789 LSRRKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQ 848
Query: 407 EKNPLPTKDVIEQEKSA 457
+K+P+ + +++ A
Sbjct: 849 QKSPVEKPKKLRKDRYA 865
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +2
Query: 251 REFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 430
+ FD +K +EK L + AE EK++ N +E+ + + N K
Sbjct: 74 KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVAN--ARK 131
Query: 431 DVIEQEK 451
+ + EK
Sbjct: 132 ETVASEK 138
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 7.4
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +3
Query: 9 AECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 188
A+ L +SS +Y +++ + ++ + K A ++ TS D +N K
Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783
Query: 189 VLPSAEDVATEKTQKSLFDGIESL 260
+LP+A+DV+++ + S D +E L
Sbjct: 784 ILPNADDVSSKNS--STEDQLECL 805
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 335 KEKNKFLNGIENFDPTKLKHTETCEKN 415
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 229 WVFSVATSSADGSTIFSLVSTSRRQL 152
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 229 WVFSVATSSADGSTIFSLVSTSRRQL 152
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.4 bits (53), Expect = 7.4
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 221 EDPEVFIRRYREFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 400
+ PE ++Y+E D K + P+PD A A EK K +G+ N + +
Sbjct: 89 KSPEGIEQKYQEEDLKDDKKSNETIATPVPDA-ASRASLEKQK--SGLTNLEKSTHVVLI 145
Query: 401 TCEKNPLPTKDVIEQEK 451
C + + K ++ EK
Sbjct: 146 KCIEQLIQIKVCMKNEK 162
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 229 WVFSVATSSADGSTIFSLVSTSRRQL 152
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 229 WVFSVATSSADGSTIFSLVSTSRRQL 152
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 232 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 134
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,194
Number of Sequences: 5004
Number of extensions: 49776
Number of successful extensions: 181
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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