Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060127.seq
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 74 1e-13
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.029
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 32 0.48
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 31 0.63
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 30 1.5
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 1.9
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 29 2.6
SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0) 29 3.4
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 29 3.4
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 29 3.4
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 5.9
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_9325| Best HMM Match : Exo_endo_phos (HMM E-Value=0.081) 28 7.8
SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9) 28 7.8
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 73.7 bits (173), Expect = 1e-13
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +2
Query: 227 PEVF--IRRYREFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 400
PEV + FD+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQ 731
Query: 401 TCEKNPLPTKDVIEQEKSA 457
T EKNPLP I QEK++
Sbjct: 732 TEEKNPLPDAKTIAQEKAS 750
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/66 (51%), Positives = 41/66 (62%)
Frame = +2
Query: 251 REFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 430
+ F+ S+L+H ET+EKN LP KD I EK F +G+E F KLKH ET EKNPLP
Sbjct: 455 KSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVETLEKNPLPDA 513
Query: 431 DVIEQE 448
I E
Sbjct: 514 QNIRAE 519
Score = 68.5 bits (160), Expect = 5e-12
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +2
Query: 251 REFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKF--LNGIENFDPTKLKHTETCEKNPLP 424
+ FD S+LKH ET EKNPLP ++ E ++ + +FD +KLKH E EKNPLP
Sbjct: 644 KSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLP 703
Query: 425 TKDVIEQEKS 454
TKD I E +
Sbjct: 704 TKDDITTEST 713
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Frame = +2
Query: 254 EFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFDPTKLKHTETCEKNPLPT 427
+FD++ LKH +T+EKN LP + I+ E + ++F + E +F+ +KL+H ET EKN LPT
Sbjct: 416 KFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPT 475
Query: 428 KDVIEQEK 451
KD I EK
Sbjct: 476 KDTIADEK 483
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +2
Query: 227 PEVFIRRYR--EFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 400
PEV R +FD+S+LKH ET+EK +P KD IEAE ++ +++FD +KLKH
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSR--AEVKSFDHSKLKHVV 579
Query: 401 TCEKNPLPTKDVIEQE 448
T EKNPLPT + +E
Sbjct: 580 TQEKNPLPTPQTLHEE 595
Score = 65.3 bits (152), Expect = 4e-11
Identities = 35/66 (53%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +2
Query: 257 FDSSQLKHTETQEKNPLPDKDAIEAEK--EKNKFLNGIENFDPTKLKHTETCEKNPLPTK 430
F ++LKH ET EKNPLPD I AE E + + FD +KLKH ET EK +PTK
Sbjct: 494 FQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTK 553
Query: 431 DVIEQE 448
DVIE E
Sbjct: 554 DVIEAE 559
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/64 (43%), Positives = 45/64 (70%)
Frame = +2
Query: 257 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 436
FD ++LKH TQEK+ +P ++ I+ E ++ +++FD +KLKH ET EKNPLP+ V
Sbjct: 610 FDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAV 667
Query: 437 IEQE 448
+++E
Sbjct: 668 LKEE 671
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +2
Query: 251 REFDSSQLKHTETQEKNPLPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNPLP 424
+ FD S+LKH TQEKNPLP + E KNK + + +FD TKLKH T EK+ +P
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMP 627
Query: 425 TKDVIEQE 448
+++ I++E
Sbjct: 628 SQEDIKEE 635
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 362 IENFDPTKLKHTETCEKNPLPTKDVIEQE 448
+ FD LKH +T EKN LP+ + I+QE
Sbjct: 414 VAKFDAANLKHVQTKEKNTLPSDETIKQE 442
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +3
Query: 102 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 221
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 102 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 221
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 90 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 245
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 32.3 bits (70), Expect = 0.36
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 160 SVTSTPMRRLCFRLLKTSPLRRPRSLY-----STVSRV*FEPAEAHRDSGEEPASGQRCY 324
SVT T RRL R S L PRS+ T+ R+ A R GEE G+ Y
Sbjct: 438 SVTGTFARRLVSRTTDASSLEDPRSVVVTSSPRTLGRISNGTTSARRVEGEEHVCGE--Y 495
Query: 325 RSGEGKEQIPERH 363
+ KE +P H
Sbjct: 496 KCSLCKEVVPPDH 508
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = -2
Query: 227 GLLSGDVFSRRKHNLLIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 84
GLL+GD+F R K N+LI VD T G + FEL + + E+ GS
Sbjct: 74 GLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 31.5 bits (68), Expect = 0.63
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -2
Query: 227 GLLSGDVFSRRKHNLLIGVDVTETAGVEAFEL 132
GLL+GD+F R K N+LI VD T G + FEL
Sbjct: 51 GLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +2
Query: 257 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 436
+D Q K E PD+D +E E+E NG+E+ D K + PT DV
Sbjct: 839 YDVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDV 895
Query: 437 IEQE 448
Q+
Sbjct: 896 ETQQ 899
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 295 EEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEP 417
EEP+ + +G KE+ E RE R H + V+EEP
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 72 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 218
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 20 ESSIPFLIKNILIHNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 154
E S+PF N N ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0)
Length = 1079
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/81 (30%), Positives = 36/81 (44%)
Frame = +3
Query: 3 HEAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 182
HE C+ + + I FTM S T S+ LPK + Q+ F S L + D+
Sbjct: 355 HEKFCSKVKPRARQLIERFTMKAQSSQTVSILILPKEIGLIPIQV--FAVSAL-ESDSES 411
Query: 183 KIVLPSAEDVATEKTQKSLFD 245
+ +L E V KTQ + D
Sbjct: 412 RNLLVVPEGVGQIKTQSFVLD 432
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 221 EDPEVFIRRYREFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHT- 397
E VF +R R + + + TET+E NP D +AE+ + G + T+ K T
Sbjct: 274 EGKSVF-KRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTN 332
Query: 398 -ETCEKNPL 421
ET K L
Sbjct: 333 METLRKEML 341
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 215 H*EDPEVFIRRYREFDSSQLKHTETQEKNPLPDKDAIEA 331
H +P+ + + +FDS LKH ++ N +P+ + +
Sbjct: 370 HEHEPKQDLYHHEDFDSYSLKHERVKQSNTVPNPSKVRS 408
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 275 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 412
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 93 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 221
L DL +V +LKS+ EG CL D++ + DV E
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKE 1166
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -2
Query: 278 ASAGSNQTLDTVE*RLLGLLSGDVFSRRKHNLLIGVDVTETAGVEAFELTLQVCGDLGEV 99
A+A T DT+ L G S F+ ++ V + V ++ LTL V V
Sbjct: 914 ATATDQDTSDTLTYALTGTNSAH-FAVSSTGMISTAHVLDRESVSSYSLTLSVSDGTANV 972
Query: 98 FQGGSVT 78
QG S+T
Sbjct: 973 TQGVSIT 979
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = +2
Query: 227 PEVFIRRYREFDSSQL--KHTETQEKNPL---PDKDAIEAEKEK-NKFLN--GIENFDPT 382
PE +Y +FD ++ +TQEK PL DK+ EA + N+ + I N P
Sbjct: 366 PEAKQGKY-DFDPTETPASRDKTQEKQPLEKTKDKEKEEANRRSYNRMASYESIGNIGPE 424
Query: 383 KLKHTETCE 409
K K ++CE
Sbjct: 425 KSKSAKSCE 433
>SB_9325| Best HMM Match : Exo_endo_phos (HMM E-Value=0.081)
Length = 249
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 202 LKTSPLRRPRSLYSTVSRV*FEPAEAHRDSGEE 300
L+ P+R PRS+ STV V + P A D ++
Sbjct: 129 LQLRPIRLPRSVSSTVLGVIYHPPHAKADDNQK 161
>SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)
Length = 433
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 130 VSSKASTPAVSVTSTPMRRLCFRLLKTSPLRRPRSLYSTVSRV*FEPAEAHRDSG 294
VSSK++ + ++ R F++LK P R + SRV H DSG
Sbjct: 45 VSSKSANETSTTPNSSSSRSIFQMLKNPPSTRTVNCPICSSRVQMASINTHLDSG 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,060,892
Number of Sequences: 59808
Number of extensions: 404265
Number of successful extensions: 1357
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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