Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060126.seq
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.5  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/55 (18%), Positives = 21/55 (38%)
 Frame = +3

Query: 375 GRVCEINEHGDAMCTASRTVPTRQTSRRMVCTNFNETWQSDCEVYASDAYASTTL 539
           G+VC++           + VP ++      C +   + +  C    S +Y  T +
Sbjct: 131 GKVCDVEMVSCKDAALRKVVPLKKLCNNGTCEDIGNSHRCHCSDGYSGSYCQTEI 185


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 557 QYHHVSNRVLXERGREMPD 613
           +Y H  N VL E G   PD
Sbjct: 308 RYGHTPNVVLDEEGNPCPD 326


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 284 NSGYFCLMVSFSSKLSDIP 228
           N G  CL+V+  + +SD P
Sbjct: 195 NDGTKCLVVTDEASISDAP 213


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 471 NFNETWQSDCEVYASDAYASTTLISAVV 554
           N+   WQS+C+  AS    + T +  VV
Sbjct: 757 NYPVCWQSNCKKGASSDKPNFTKLIQVV 784


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,376
Number of Sequences: 336
Number of extensions: 2999
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)