Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060126.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    28   1.5  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   4.4  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    25   7.8  

>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 311 IRDLVEKVVNSGYFCLMVSFSSKLSDIPCSMCSASEMSPRP 189
           +R ++EK   +  FC++ ++ +K+S    S C+     P P
Sbjct: 140 LRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 180


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 501 EVYASDAYASTTLISAVVRNTTTFQIEYYXNVAEKCLTALKSE--MSDFPRSHAGLGFL 671
           EVY+    +  +L+ AVV    T    +  ++  + LT L++    +DF  S +G  FL
Sbjct: 312 EVYSGPLKSIVSLLPAVVFQVLTLPFTFIYSIVAERLTKLENRRTKTDFQASLSGKMFL 370


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 457 AWCAQTSTKPGNRIAKYTPAMLMPRQL 537
           +WC  T++  G +  KYTP +   + L
Sbjct: 116 SWCDTTASTVGRKWGKYTPKIAKNKSL 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,507
Number of Sequences: 5004
Number of extensions: 46981
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)