Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060126.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0862 + 28353235-28354431 32 0.49
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 31 1.1
03_02_0520 + 9092020-9092079,9092253-9093047 30 1.5
06_01_0985 - 7646772-7647451,7647957-7648107 30 2.0
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 29 2.6
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 29 2.6
02_05_1067 - 33858215-33858321,33858422-33858527,33859014-338592... 29 3.5
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 29 3.5
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 28 6.0
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 8.0
06_03_1200 - 28352647-28352712,28353097-28353216,28353314-283534... 28 8.0
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 8.0
>03_05_0862 + 28353235-28354431
Length = 398
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 602 LGHVPVILDLKRGGIADHGTDQSCRGISIAGVYFAIRLPGFVEVCAH 462
+G V V++D G +A + + C G+ + VYFA+ L G VCA+
Sbjct: 317 IGDVAVLVDAS-GAVA--ASTRECPGLRPSTVYFAVDLAGETRVCAY 360
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -3
Query: 276 LFLPHGIVLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 157
+F GI+ AL+ VLD+ +++ +P+ +L+RWT +R
Sbjct: 485 MFSRTGILCAHALK--VLDLMNIKSLPSQYVLKRWTRGAR 522
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -3
Query: 261 GIVLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 157
GI+ AL+ VLD+ +++ +PA +L+RWT +R
Sbjct: 129 GILCGHALK--VLDLMNIKSLPAQYILKRWTREAR 161
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 261 GIVLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 157
GI+ AL+ VLDV +++ +P +L+RWT +R
Sbjct: 231 GILCSHALK--VLDVMNIKSLPKRYILKRWTREAR 263
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 261 GIVLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 157
GI+ AL+ +LDV +++ VP +L+RWT ++
Sbjct: 310 GILCSHALK--ILDVNNIKSVPQQYILKRWTIDAK 342
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 261 GIVLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 157
GI+ AL+ VLD+ ++ +PA +L+RWT +R
Sbjct: 187 GILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219
>02_05_1067 -
33858215-33858321,33858422-33858527,33859014-33859218,
33859463-33859650,33859780-33859957,33860201-33860298,
33860619-33860873,33861002-33861236,33861846-33861973
Length = 499
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 548 GTDQSCRGISIAGVYFAIR--LPGFVEVCAHHASGSLSRRDSP*CST 414
GTD+ RGI I G+ + I +P +V+ H A + +S C T
Sbjct: 377 GTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGESGSCFT 423
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = -3
Query: 201 VPAAELLRRWTFSSRGADPAVPTPHTLASAV-QMTAITRA--NARRP---FILPFDDAFL 40
+PA LL RGA P P+PH +S++ ++ TR R P F+ P L
Sbjct: 60 LPAVALLLFEASRLRGASPDGPSPHVSSSSLGRLDPTTRLVHGVREPCLNFLSPRSIEDL 119
Query: 39 CEAGGSRVESLV 4
GG++++S+V
Sbjct: 120 VFPGGTKLDSVV 131
>04_04_0927 + 29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +3
Query: 375 GRVCEINEHGDAMCTASRTVPTRQTSRRMVCTNFNETWQSDCEVYASDAYASTTLISAVV 554
G++ HG ++ T VP S +V + + Q+ ++SD Y + ++A
Sbjct: 911 GQLNNTQNHGSSIQTEKECVPL---SNAVVPEDVPFSQQNGARKFSSDGYTTEAPLAAPP 967
Query: 555 RNTTTFQIEYYXNVAEKCLTALKSEMS--DFPRSHAG 659
++ T QIE+ V + K ++ F R H G
Sbjct: 968 TDSVTEQIEHGVYVTFSTSSCGKKDIKRIRFSRKHFG 1004
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -1
Query: 413 HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 270
HG+ V +FAD S V++ + V+ F + FIR+L E + S F
Sbjct: 984 HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037
>06_03_1200 -
28352647-28352712,28353097-28353216,28353314-28353466,
28354652-28354804,28354890-28354967
Length = 189
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 366 CSA-GRVCEINEHGDAMCTASRTVPTRQTSRRMVCTNF 476
CSA G V + HG A+ T+SRT+ S+ TNF
Sbjct: 81 CSALGSVALLPGHGKALTTSSRTMVMMLQSKGYTPTNF 118
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 251 SSKLSDIPCSMCSASEMSPRPSCSDVG 171
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,908,498
Number of Sequences: 37544
Number of extensions: 374964
Number of successful extensions: 1148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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