Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060126.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    34   0.083
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    34   0.083
AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical ...    30   1.8  
AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormo...    29   4.1  
Z71264-6|CAC35821.1|  374|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL008986-1|CAC35820.1|  374|Caenorhabditis elegans Hypothetical ...    28   5.4  
AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    28   5.4  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    28   7.2  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   7.2  

>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 34.3 bits (75), Expect = 0.083
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 348 PCLKVHCSAGRVCEINEHGDAMCTASRTVPTRQTSRR-MVCTNFNETWQSDCEVY 509
           PC    C  G+ C + + G+  C      P         VC N N+T+ S C++Y
Sbjct: 52  PCEDHQCGWGKECVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLY 106


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 34.3 bits (75), Expect = 0.083
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 348 PCLKVHCSAGRVCEINEHGDAMCTASRTVPTRQTSRR-MVCTNFNETWQSDCEVY 509
           PC    C  G+ C + + G+  C      P         VC N N+T+ S C++Y
Sbjct: 52  PCEDHQCGWGKECVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLY 106


>AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6b protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 476 QRNLAIGLRSIRQRCLCLDNSDQCRGPQYHHVSNRVLXERGREMPDCTEKRDV*LP 643
           ++NL  G+ +  Q C CLD   Q R     +V   +  +  R  P+C +  D  +P
Sbjct: 222 EKNLRFGILNGCQHCFCLDCIRQWRSKDQENV--ELATKTVRSCPECRQHSDYVIP 275


>AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6a protein.
          Length = 413

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 476 QRNLAIGLRSIRQRCLCLDNSDQCRGPQYHHVSNRVLXERGREMPDCTEKRDV*LP 643
           ++NL  G+ +  Q C CLD   Q R     +V   +  +  R  P+C +  D  +P
Sbjct: 222 EKNLRFGILNGCQHCFCLDCIRQWRSKDQENV--ELATKTVRSCPECRQHSDYVIP 275


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 471 NFNETWQSDCEVYASDAYASTTLISAVVRNTTTFQI 578
           N+     SDCE YA+   +S T IS V+ ++ T ++
Sbjct: 21  NYKSPESSDCEGYATPLASSLTDISNVINHSVTIKV 56


>AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 270 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 198 PAAELLRRWTFSSRGAD--PAVPTPHTLASAVQMTAI 94
           P +++ RRW  +SRG    P+  + H+L  ++ M A+
Sbjct: 15  PLSKISRRWNLNSRGGAIVPSSTSVHSLGHSISMLAV 51


>Z71264-6|CAC35821.1|  374|Caenorhabditis elegans Hypothetical
           protein K07G5.6 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 437 YETDFQTHGVHKLQRNLAIGLRSIRQRCLC 526
           YE+D  THG+ ++ +NL +G +  +    C
Sbjct: 332 YESDHLTHGISEIVKNLLLGRKDQQLEVAC 361


>AL008986-1|CAC35820.1|  374|Caenorhabditis elegans Hypothetical
           protein K07G5.6 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 437 YETDFQTHGVHKLQRNLAIGLRSIRQRCLC 526
           YE+D  THG+ ++ +NL +G +  +    C
Sbjct: 332 YESDHLTHGISEIVKNLLLGRKDQQLEVAC 361


>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 207 RDVPAAELLRRWTFSSRGADPAVPTPHTLASAVQMTAITRANARRP 70
           RD+P  +L+R WT   R    A     TL   +Q     R N   P
Sbjct: 315 RDLPVHDLVREWTLLDRSTLQARLNMETLTHGMQEHTFIRYNKIEP 360


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 351 CLKVHCSAGRVCEINEHGDAMCTASRTVPTRQTS 452
           C K  C +G  C + +H    C  +  V   QTS
Sbjct: 499 CAKTDCPSGYRCSVVQHSSVCCPENNKVVGLQTS 532


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 348 PCLKVHCSAGRVCEINEHGDAMCTASRTVPTR-QTSRRMVCTNFNETWQSDCEV 506
           PC K+ C     C +     A C      P R +   R VC    ET+ ++CE+
Sbjct: 369 PCEKMECGFWGSCVVKPDRTAECEC----PNRCEDVMRPVCATNGETFDNECEM 418


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 348 PCLKVHCSAGRVCEINEHGDAMCTASRTVPTR-QTSRRMVCTNFNETWQSDCEV 506
           PC K+ C     C +     A C      P R +   R VC    ET+ ++CE+
Sbjct: 377 PCEKMECGFWGSCVVKPDRTAECEC----PNRCEDVMRPVCATNGETFDNECEM 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,986,537
Number of Sequences: 27780
Number of extensions: 291621
Number of successful extensions: 925
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)