Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060126.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              41   1e-05
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
 Frame = +3

Query: 348 PCLKVHCSAGRVCEINEHGD-AMCTASRTVPTRQTSRRMVCTNFNETWQSDCEVYASDAY 524
           PC   +C  G+ CE++ +   A+C   R  P R    R VC +  + + + CE++ +  +
Sbjct: 81  PCASKYCGIGKECELSPNSTIAVCVCMRKCPRR---HRPVCASNGKIYANHCELHRAACH 137

Query: 525 ASTTLISAVVRNTTTFQIE--YYXNVAEKCLTALK-SEMSDFPRSHA 656
           + ++L  + +       IE  +         T+LK S++  +P+S +
Sbjct: 138 SGSSLTKSRLMRCLHHDIENAHIRRTLHMNRTSLKTSKIVSYPKSRS 184


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 411 MCTASRTVP-TRQTSRRMVCTNFNETWQSDCEVYASDAYASTTLISAV 551
           +C AS  +  +  TS + +    N+T  +DC +   D  A T L++++
Sbjct: 16  LCLASTILSESAGTSCKWLSEGGNDTRSADCTLRVLDPGAITGLVASL 63


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 656 RMRTGEVRHLAFQCSQAFLGHVPVILDLK 570
           R+ TGE  H    CS+ F+    +++ ++
Sbjct: 168 RIHTGERPHKCTVCSKTFIQSGQLVIHMR 196


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 214 QPPRCPRGR 188
           QPP+CPR R
Sbjct: 564 QPPQCPRFR 572


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,046
Number of Sequences: 438
Number of extensions: 3279
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)