Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060125.seq
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    26   6.2  

>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/74 (21%), Positives = 33/74 (44%)
 Frame = -1

Query: 440 SGALAECEQQIRQFIIQNVXREHPHSFLINKTYLLVKSVSFA*GSDHSTHTGNSLQSEGP 261
           S A+   +Q ++  +  ++  EH    +I   YLLV + +F     H  HT         
Sbjct: 120 STAIPYVKQLVKAVVTNDMRIEHKRGIII-AAYLLVSAKAFGKDELHINHTERRKAQSVL 178

Query: 260 RPLNETLKIEHLVY 219
           +  +  L+I++ ++
Sbjct: 179 QDTSSALQIQYWMH 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,666
Number of Sequences: 5004
Number of extensions: 47068
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)