Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060125.seq
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0643 - 10090720-10091007,10091121-10091228,10091314-100914...    29   2.8  
01_06_1833 + 40208360-40208587,40208677-40209024,40209101-40209676     28   8.5  

>03_02_0643 -
           10090720-10091007,10091121-10091228,10091314-10091400,
           10091488-10091568,10091669-10091803,10091919-10092140,
           10092377-10092457,10092565-10092726,10092851-10093041,
           10093190-10093331,10093449-10093547,10093668-10093806,
           10094355-10094392
          Length = 590

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 473 SDGLATV*RWSSGALAECEQQIRQFIIQNVXREHPHSFLINK 348
           SDG+     W  G  A  EQQ+   +++N  + +PH+  +NK
Sbjct: 441 SDGVGY--NWIDGLKAFTEQQVSDEMMKNAAKVYPHNTPVNK 480


>01_06_1833 + 40208360-40208587,40208677-40209024,40209101-40209676
          Length = 383

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 486 DRR*TVTSRHQTVARPRWERQM 551
           D R  +    + VARPRWERQM
Sbjct: 348 DLRNVIRDWRRYVARPRWERQM 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,146
Number of Sequences: 37544
Number of extensions: 301325
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)