Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060125.seq
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical pr...    31   0.62 
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC024859-19|AAK29975.1|  139|Caenorhabditis elegans Hypothetical...    29   4.4  

>Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical
           protein F09A5.2 protein.
          Length = 894

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 277 NEFPVCVL*SLPYANETDFTSKYVLLIRNE*GCSRXTFCMINCRICC 417
           NEF +C+  S P   + DF  + +L+I     C   T C I   +CC
Sbjct: 330 NEFEICIPDSQPSGKKEDFNWQLLLIIGIP--CISLTICCIAFFVCC 374


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = +1

Query: 274  CNEFPVCVL*SLPYANETDFTSKYVLLIRNE*GCSRXTFCMINCR----ICC--SHSASA 435
            C + P CV    P      + +  V+L  N+ GC + + C++N +    ICC   H+ S+
Sbjct: 1605 CPDVPFCVEVQCPIPQRDLYRN--VILCENDGGCGKNSKCVLNPKTEMGICCHQKHTQSS 1662

Query: 436  PLD 444
             L+
Sbjct: 1663 VLN 1665


>AC024859-19|AAK29975.1|  139|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.4 protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 467 GLATV*RWSSGALAECEQQIRQFIIQNVXREHPHSF 360
           G AT   +++GAL E   Q R  +I++  + HP  F
Sbjct: 75  GAATAAGYAAGALRERHYQTRDAVIEHYMKLHPEDF 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,350,758
Number of Sequences: 27780
Number of extensions: 271699
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)