Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060123.seq
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   9.6  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 233 DPDAKVALKP*LKPVWCFCVAKS 301
           +P+ K   +P L P W +C   S
Sbjct: 178 EPEKKTESQPMLWPAWVYCTRYS 200


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 408  HHTACLVIKAFGRIIITNMFDRFAHNFLII 319
            HH    +IK+F  I    +   F  NFLII
Sbjct: 1308 HHHLSKLIKSFNEIYGVPLLLFFGLNFLII 1337


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 688 LCGELLHHQANT-YSQVNLCFLNLVLPTKISHFA 590
           L   L ++  N  Y  +N+C LNL + T   +FA
Sbjct: 42  LLTNLTYNNTNRKYYWLNVCCLNLSIVTIFFNFA 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,296
Number of Sequences: 336
Number of extensions: 4353
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)