Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060123.seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   139   4e-34
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   3.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.4  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   5.9  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   5.9  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   7.9  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  139 bits (336), Expect = 4e-34
 Identities = 71/149 (47%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
 Frame = +1

Query: 244 KSCIETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQ 423
           K   ET +KTGMV++ GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++Q
Sbjct: 40  KVACETASKTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQ 99

Query: 424 QSPNIAAGVHENRNDEEVGAGDQGLMFGLQQMRQKNACR*L*CLHTNSIRKLQSF-RRNG 600
           QSP+IA G+H  +  EE+GAGDQG+MFG            L  L  + +    S  RR+G
Sbjct: 100 QSPDIAQGLHYEKALEELGAGDQGIMFGYATDETPEKLP-LTILLAHKLNAAMSVARRDG 158

Query: 601 RFWWARPDSKNTGLLANMYLPGGATVPHR 687
              W RPD+K T +        GA +P R
Sbjct: 159 SLPWLRPDTK-TQVTIEYEEENGAVIPRR 186



 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 32/38 (84%), Positives = 34/38 (89%)
 Frame = +2

Query: 140 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVA 253
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVA
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVA 42


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 44  WANSKFRMPETSKMNGXAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 214
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = -1

Query: 572  LIEFVCKHYSQRHAFFCLICCKPNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHV 393
            +IE VC   S  H    +I   PN   + P   +  +     P +  G  WS+  +  H 
Sbjct: 1873 VIEVVCNDRSG-HRQSSVIKIDPNETGYVPLDLACLYPLRIRPVSKLGFLWSNQIVDWHS 1931

Query: 392  L*SKPL 375
            L   PL
Sbjct: 1932 LNKSPL 1937


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 411 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 286
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 307 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 426
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 196 LVAHFVWMTLANRFRCEQKY*SIFHII 116
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 442 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 323
           Q  +V V + +   CM+ +QSL  + HN ++  F+ +L D
Sbjct: 61  QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,329
Number of Sequences: 5004
Number of extensions: 68642
Number of successful extensions: 219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)