Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060123.seq
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 118 6e-27
01_02_0051 - 10655867-10657057 116 1e-26
01_03_0090 - 12347165-12348349 113 2e-25
02_05_0090 - 25742533-25744557 29 2.6
04_03_0115 - 11428116-11429594 29 3.5
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 28 6.1
12_02_0655 + 21588662-21589051 28 6.1
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 28 6.1
>05_01_0264 + 2030080-2031270
Length = 396
Score = 118 bits (283), Expect = 6e-27
Identities = 67/157 (42%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Frame = +1
Query: 223 SESGSGRKSCIETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCS 402
+E + +C ET TKT MV++ GEIT+KANVDY+K+VRET ++IG+ + G D C
Sbjct: 36 AEDPDSKVAC-ETCTKTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCK 94
Query: 403 VMLALDQQSPNIAAGVHEN--RNDEEVGAGDQGLMFGLQQMRQKNACR*L*CLHTNSIRK 576
V++ ++QQSP+IA GVH + + EE+GAGDQG MFG L T +
Sbjct: 95 VLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAR 154
Query: 577 LQSFRRNGRFWWARPDSKNTGLLANMYLPGGATVPHR 687
L R+NG W RPD K T + GA VP R
Sbjct: 155 LTEVRKNGTCAWLRPDGK-TQVTVEYRNESGARVPVR 190
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = +2
Query: 140 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVA 253
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVA
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVA 44
>01_02_0051 - 10655867-10657057
Length = 396
Score = 116 bits (280), Expect = 1e-26
Identities = 66/157 (42%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Frame = +1
Query: 223 SESGSGRKSCIETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCS 402
+E + +C ET TKT MV++ GEIT+KANVDY+K+VR+T + IG+ + G D + C
Sbjct: 36 AEDPESKVAC-ETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCK 94
Query: 403 VMLALDQQSPNIAAGVHEN--RNDEEVGAGDQGLMFGLQQMRQKNACR*L*CLHTNSIRK 576
V++ ++QQSP+IA GVH + + EE+GAGDQG MFG L T +
Sbjct: 95 VLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAR 154
Query: 577 LQSFRRNGRFWWARPDSKNTGLLANMYLPGGATVPHR 687
L R+NG W RPD K T + GA VP R
Sbjct: 155 LTEVRKNGACAWLRPDGK-TQVTVEYQNDNGAMVPLR 190
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = +2
Query: 122 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVA 253
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVA
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVA 44
>01_03_0090 - 12347165-12348349
Length = 394
Score = 113 bits (271), Expect = 2e-25
Identities = 64/150 (42%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Frame = +1
Query: 244 KSCIETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQ 423
K ET TKT MV++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++Q
Sbjct: 41 KVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQ 100
Query: 424 QSPNIAAGVHEN--RNDEEVGAGDQGLMFGLQQMRQKNACR*L*CLHTNSIRKLQSFRRN 597
QSP+IA GVH + + EE+GAGDQG MFG L T +L R+N
Sbjct: 101 QSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKN 160
Query: 598 GRFWWARPDSKNTGLLANMYLPGGATVPHR 687
G W RPD K T + GA VP R
Sbjct: 161 GTCAWLRPDGK-TQVTVEYLNDAGAMVPVR 189
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/38 (81%), Positives = 35/38 (92%)
Frame = +2
Query: 140 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVA 253
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVA
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVA 43
>02_05_0090 - 25742533-25744557
Length = 674
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 534 MPLTVVLAHKLNQKIAELQAKWEILVGKTRF 626
+ + V++ H+ ++ AEL+ +WE+ G RF
Sbjct: 315 LAIAVLVIHRRRRRYAELKEEWEVAFGPHRF 345
>04_03_0115 - 11428116-11429594
Length = 492
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 444 WGA*EQK*RGSWGRRPGLDVRFATDETEECMPLTVVLAHKLNQKIAELQAKWEILVGKT 620
WGA + RG+W P L+ + E M +T A K+ Q + ++Q ++G+T
Sbjct: 413 WGACVEVSRGNWPDSPALERERVVEVVEMVMGIT-AKADKIRQSVKQIQG----MIGRT 466
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.3 bits (60), Expect = 6.1
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +1
Query: 190 RPNKRRYSRRASESGSGRKSCIETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDD 369
RP + SR A S K I TI K+G G + + D+ + E+ G+
Sbjct: 137 RPGSSQLSRFADNSSENMKVSIRTIDKSGS-SSHGHGFTLSTGDFPTLGSESNSQRGH-- 193
Query: 370 SSKGFDYKTCSVMLALDQQSPNIAAGVHE 456
SSKG + A ++Q +I AG E
Sbjct: 194 SSKGRPTSSSGKETAQNEQGKSITAGPAE 222
>12_02_0655 + 21588662-21589051
Length = 129
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +1
Query: 88 WIXENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRASESGSGRK 246
WI QR ++ G W RGS V P +RR SRR SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 689 SLWGTVA---PPGKYIFASKPVFFESGLAHQNLPFRLKLCNFLIEFVCKHYSQRHAFFC 522
SLW + PP FA+ V F + P ++ +FL+ +H +QRHAF C
Sbjct: 53 SLWANLQSALPPDA--FATALVVFLGDYCDRG-PSTREVIDFLLALPSRHPAQRHAFLC 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,770,963
Number of Sequences: 37544
Number of extensions: 461468
Number of successful extensions: 1295
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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