Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060123.seq
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -1

Query: 557 CKHYSQRHAFFCL---ICCK--PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLH 396
           CK+Y        L   + C+  PN++P S    +++      P  M  D W+S  + LH
Sbjct: 35  CKNYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSV-MELH 92


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 140 ILIHLPYHNCVRWFSXIHSFLKSPAF 63
           I+ HL  H  V W+S   +F   P +
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTY 198


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 130 WISIFVHIGICWRGSSRQNVRPNKRR 207
           W+ + V +GI  +G +   VR N  R
Sbjct: 4   WLLLVVCLGIACQGITSVTVRENSPR 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,603
Number of Sequences: 438
Number of extensions: 4578
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)