Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060122.seq
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 127 1e-30
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 77 3e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 72 6e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 63 4e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 51 1e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 50 2e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 49 7e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 48 9e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 48 2e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 47 3e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 44 1e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 42 8e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 1e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 38 0.001
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 38 0.001
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 38 0.001
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 32 0.063
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.19
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.19
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 28 1.0
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 28 1.4
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 1.8
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.4
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 26 4.2
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.6
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 9.6
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 127 bits (307), Expect = 1e-30
Identities = 58/111 (52%), Positives = 75/111 (67%)
Frame = +3
Query: 261 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 440
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 441 KTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQP 593
K +G++ PTPIQ Q WP + +++VG++ T SGKTL+Y LPAIVHIN QP
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQP 188
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 481 KAGPIAMSGRI*LA*LKRLPXKRWPTSCQP-LCT*TTNRLFGRGDGPIALVLA 636
+A P+AMSGR + + + + C P + L GDGPI LVLA
Sbjct: 151 QAWPMAMSGRD-MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLA 202
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 76.6 bits (180), Expect = 3e-15
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Frame = +3
Query: 258 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 434
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 435 GVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPPIR 602
+ ++GY++PT IQAQ P ++++GVA T SGKT+A++LP HI +Q P++
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 72.1 bits (169), Expect = 6e-14
Identities = 31/86 (36%), Positives = 55/86 (63%)
Frame = +3
Query: 342 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVG 521
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 522 VAXTASGKTLAYILPAIVHINNQPPI 599
+A T SGKT A+I+P I+ I+ PP+
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPL 317
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 62.9 bits (146), Expect = 4e-11
Identities = 29/66 (43%), Positives = 45/66 (68%)
Frame = +3
Query: 387 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILP 566
PI F+E + +++G+K YKEPTPIQA WP +++VG+A T SGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 567 AIVHIN 584
A+ ++N
Sbjct: 223 ALQYLN 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
F+E D + + + +G+K PTPIQ + P ++++G+A T SGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 579 INNQP 593
+ N P
Sbjct: 108 LWNNP 112
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/82 (30%), Positives = 45/82 (54%)
Frame = +3
Query: 327 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVW 506
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 507 KNLVGVAXTASGKTLAYILPAI 572
++++G A T SGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.8 bits (111), Expect = 7e-07
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILP 566
F+ N +++ V G+K+ TP+QA P K+LV A T SGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 48.4 bits (110), Expect = 9e-07
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
F+ N + +G+ +G++ PT IQ + P + + K++VG A T SGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 579 INNQP 593
+ +P
Sbjct: 321 LLYRP 325
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +3
Query: 357 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTA 536
V VSG ++ P+ F ++ Q +K GY +PTP+Q P ++L+ A T
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 537 SGKTLAYILPAI 572
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
F+ + + + G+K PTPIQ + P +++VG+A T SGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 579 INN 587
+ +
Sbjct: 131 LKS 133
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/77 (28%), Positives = 41/77 (53%)
Frame = +3
Query: 369 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKT 548
G+ + + F + N +Q+ + +++PT +Q++ P + K+LV A T SGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 549 LAYILPAIVHINNQPPI 599
AY++P + + Q I
Sbjct: 66 AAYLIPILELLLKQKQI 82
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 41.9 bits (94), Expect = 8e-05
Identities = 28/103 (27%), Positives = 46/103 (44%)
Frame = +3
Query: 333 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKN 512
EE E+ + + +F E + +K + T IQ Q P + ++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 513 LVGVAXTASGKTLAYILPAIVHINNQPPIRXR*WSDCFGLGRL 641
++G A T SGKTLA+I+P I ++ + W+ GLG L
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKK------WTSLDGLGAL 115
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +3
Query: 450 GYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
G+ +P PIQ+ P++ + +++G A T SGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/64 (23%), Positives = 36/64 (56%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE+ + G+ G++ P+PIQ + P + ++++ A +GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 579 INNQ 590
++ +
Sbjct: 106 VDTK 109
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/84 (25%), Positives = 43/84 (51%)
Frame = +3
Query: 333 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKN 512
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ ++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 513 LVGVAXTASGKTLAYILPAIVHIN 584
++ A + +GKT + + + I+
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSID 84
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = +3
Query: 294 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 470
P P++ ++ +++ + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGITKG-KAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 471 IQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPP 596
IQ P ++L+ A T SGKT+AY+ P + + P
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 32.3 bits (70), Expect = 0.063
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 366 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYV-WKNLVGVAXTASG 542
S ++ P + E A+ + + G+++ TP+Q + + + +N V A T +G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 543 KTLAYILPAIVHINNQPP 596
KTLA++L A + P
Sbjct: 89 KTLAFLLVAFKDVLKGKP 106
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.7 bits (66), Expect = 0.19
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 510 NLVGVAXTASGKTLAYILPAIVHINNQPP 596
NL+ V T GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.7 bits (66), Expect = 0.19
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 510 NLVGVAXTASGKTLAYILPAIVHINNQPP 596
NL+ V T GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 525 AXTASGKTLAYILPAIVHINNQP 593
A T SGKTLAY+LP + + P
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLP 207
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 372 VEVHNPIQYFEEAN--FPDYVQQGVKTMGYKEPTPIQAQGWPDSYV-WKNLVG 521
+E HNPI + F ++ Q M K P ++A+G PD V K VG
Sbjct: 415 IESHNPIDNNKHHRMLFSNFAAQTEALMLGKTPAEVKAEGTPDEIVPHKTFVG 467
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/37 (21%), Positives = 22/37 (59%)
Frame = +2
Query: 152 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQIGICF 262
+ D++ + + + + +NS+++ +C+ Q+G CF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 525 AXTASGKTLAYILPAIVHINNQPPIRXR 608
A T SGKTL+Y++P + ++++ R R
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLR 207
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +3
Query: 228 SEHASPRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 389
++ A R+G + +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 390 IQYFEEANFPDYVQQGVKT 446
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 450 PLSLHLVAHNQENL--LLQSIE 391
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -2
Query: 96 IIPVTR-HD*FSDLVEDVYLNYGFFLTQ-GPPRA 1
++PVT+ + D++ED++ NY F +T+ G RA
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTEYGKGRA 254
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +3
Query: 270 PFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 395
PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 117 PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 271 LSTKTFMIHILQFSKDHHMKSKSTEIIT 354
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,684
Number of Sequences: 5004
Number of extensions: 48170
Number of successful extensions: 135
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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