Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060122.seq
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 3e-21
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 71 6e-13
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 64 7e-11
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 61 9e-10
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 56 3e-08
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 47 2e-05
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 46 2e-05
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 45 5e-05
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 44 1e-04
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 42 3e-04
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 40 0.002
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 39 0.003
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 38 0.010
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 38 0.010
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 36 0.022
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 33 0.15
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 32 0.47
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 31 0.83
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 31 1.1
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 1.9
SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13) 30 1.9
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 29 3.3
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 28 5.8
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 28 7.7
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 7.7
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 99.1 bits (236), Expect = 3e-21
Identities = 42/120 (35%), Positives = 69/120 (57%)
Frame = +3
Query: 243 PRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 422
P + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 423 YVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPPIR 602
+ ++ + Y +PT IQ Q P + ++++G+A T SGKT A++ PA+VHI +QP ++
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQ 586
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 71.3 bits (167), Expect = 6e-13
Identities = 33/87 (37%), Positives = 52/87 (59%)
Frame = +3
Query: 339 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLV 518
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q P ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 519 GVAXTASGKTLAYILPAIVHINNQPPI 599
GVA T SGKT A+ +P +V I P I
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGLPKI 169
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 64.5 bits (150), Expect = 7e-11
Identities = 33/108 (30%), Positives = 56/108 (51%)
Frame = +3
Query: 273 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 452
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 453 YKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPP 596
++ PTPIQ Q ++++G+A T SGKTLAY LP + + + P
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAP 139
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/93 (39%), Positives = 49/93 (52%)
Frame = +3
Query: 315 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPD 494
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ---- 112
Query: 495 SYVWKNLVGVAXTASGKTLAYILPAIVHINNQP 593
+ILP IVHIN+QP
Sbjct: 113 --------------------FILPGIVHINHQP 125
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/88 (31%), Positives = 46/88 (52%)
Frame = +3
Query: 288 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 467
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 468 PIQAQGWPDSYVWKNLVGVAXTASGKTL 551
PIQ Q P ++++ A T SGK L
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/78 (37%), Positives = 41/78 (52%)
Frame = +3
Query: 354 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXT 533
EV VSG I FEEAN + V+ YK+PTP+Q P ++++ A T
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 757
Query: 534 ASGKTLAYILPAIVHINN 587
SGKT A++LP + + N
Sbjct: 758 GSGKTAAFLLPVMTSMMN 775
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +3
Query: 255 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQ 431
+V QPF K+FY P + K +P E +E+R + E + V G P++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 432 QGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXT 533
+K Y++PTPIQAQ P ++++ + T
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMT 151
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +3
Query: 363 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASG 542
VSG I F E F + + + GY+ PTP+Q P ++L+ A T SG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 543 KTLAYILPAIVHINNQ 590
KT AY+LP + + Q
Sbjct: 529 KTAAYMLPVLTSLIKQ 544
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +3
Query: 390 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPA 569
I FE+ + + + V GYK+PTP+Q P ++L+ A T SGKT A+++P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 570 IVHINNQPP 596
+ I + P
Sbjct: 934 LSRIYMEGP 942
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +3
Query: 390 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPA 569
++ F + G+ G+ PT IQ QG P + ++++G A T SGKTLA+++P
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 570 IVHINNQPPIRXR*WSDCFGLGRL 641
I + Q W+ GLG L
Sbjct: 109 IETLWRQK------WTSMDGLGAL 126
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +3
Query: 327 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWP 491
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATP 195
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +3
Query: 417 PDYVQQGVKTMGYKEPTPIQAQGWPDSYVW-KNLVGVAXTASGKTLAYILPAIVHI 581
PD + + + G+ +PTPIQ+ P + ++ ++++G A T SGKTLA+ +P I HI
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHI 193
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/65 (38%), Positives = 33/65 (50%)
Frame = +3
Query: 354 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXT 533
EV VSG I FEEAN + V+ YK+PTP+Q P ++++ A T
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 180
Query: 534 ASGKT 548
SGKT
Sbjct: 181 GSGKT 185
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +3
Query: 354 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXT 533
EV + G P + F +Y + +G PT +Q WP +++ GVA
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 534 ASGKTLAYILPAIVH 578
SGK LAY+LP I+H
Sbjct: 234 GSGKRLAYLLP-IIH 247
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 432 QGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQP 593
+ V +G+ PTPIQA P + + K++ A T +GKT A++LP + + +P
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP 76
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 432 QGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
QG+K MG+ T IQ + ++L+G A T SGKTLA+++P +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +3
Query: 417 PDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
P V++ +K MG +P PIQ + P + K+L+ + T +GK+L ++LP++
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV 219
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 447 MGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQP 593
MG K+PT IQ P ++ +G A T SGKT A+ LP + + + P
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDP 73
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
FE+ + G+ G+ +P+PIQ + P + ++++ A +GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
FE+ + G+ G+ +P+PIQ + P + ++++ A +GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +3
Query: 351 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP----DSYVWK 509
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P D V
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPV-- 143
Query: 510 NLVGVAXTASGKTLAYILPAIVHINNQPP 596
N++ + + +GKT A++L + ++ P
Sbjct: 144 NMIAQSQSGTGKTAAFVLTMLSRVDATKP 172
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 33.5 bits (73), Expect = 0.15
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Frame = +3
Query: 294 PHPTVLK-RSPYEVEEYRNNHEVTV-SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 467
P TV K +E N T S + + F D V + + + +PT
Sbjct: 343 PEATVSKGEKEVTIEAVGQNPAFTPDSDMAFRQRVYSFAGLGLRDDVLKALDALNIHQPT 402
Query: 468 PIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
IQ P +++ A T SGKTLAY+ P +VH
Sbjct: 403 VIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAP-LVH 438
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 468 PIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
PIQA + Y ++++G A T +GKTL++ LP +
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLV 132
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 432 QGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHI 581
+G+ G+++P+PIQ + P +L+ A + +GKT + + A+ ++
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENV 75
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 375 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 488
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Frame = -2
Query: 630 DQS-NRTITSXE*AVGCLCAQWLARCR---PTFXRKPFXLRQLNSSRHSYRASLELE*AS 463
DQ+ N TI E + A W + C+ P F LR N S + ++
Sbjct: 58 DQNFNETIKKNEYVLVDFYAPWCSDCQRLSPLFDTAALQLRDNNPSLRFAKVIYSIDECK 117
Query: 462 VLCNPLSLHLVAHNQENLLLQSIE*DYEP--QRHLQLPRDYFCTLRLH 325
VLC+ L + E LL+ + ++EP Q+H + D++ H
Sbjct: 118 VLCDNLMASDGVPDDEPTLLELDDSNFEPAVQKHKFVLVDFYAPWCFH 165
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 285 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 425
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13)
Length = 880
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = +2
Query: 425 CATRCKDNGL--QRTDAYSSSRLAR*LCLEEFSWRSXNGFRXNVGLHLASHCAHKQPTAY 598
C C DN QR AYSS ++ +CL F+ + N+ HL S T
Sbjct: 603 CWGVCFDNQFVEQRPAAYSSRAMS--VCLATFALLCLTSYTANLTAHLVSDDTKPYVTGI 660
Query: 599 SXEVMVRLLWSW 634
+ + WSW
Sbjct: 661 RDKKVKHDAWSW 672
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 229 QNMRRPDWDLFHSNLSTKTFMIHILQFSKD 318
+N RR WD FHSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 28.3 bits (60), Expect = 5.8
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Frame = +3
Query: 228 SEHASPRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ---- 395
SE AS S SLQ N N DP L R+ + R +VT ++ P Q
Sbjct: 239 SEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLLVRTITKVTFLQQQIAQPRQLTLT 298
Query: 396 -YFEEANFPDYV----QQG--VKTMGYKEPTPIQAQG 485
YF E + DYV Q G + G P+P + G
Sbjct: 299 KYF-ETDSSDYVVELLQDGSAANSKGSDTPSPASSGG 334
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 450 GYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIV 575
GY + P+Q Q K+ + + T +GKT+ Y +PA++
Sbjct: 136 GYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPALL 177
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 235 CSDLQRILFSHQILQILQIYCHRC-QIETN 149
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 166 CQIETNYRRICCLLQIWN-HRFHGYYSS 86
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,546,070
Number of Sequences: 59808
Number of extensions: 354351
Number of successful extensions: 1007
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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