Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060122.seq
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 91 8e-19
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 85 6e-17
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 83 2e-16
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 75 3e-14
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 64 6e-11
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 64 6e-11
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 64 6e-11
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 63 1e-10
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 58 4e-09
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 54 9e-08
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 48 4e-06
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 48 4e-06
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 48 4e-06
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 46 3e-05
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 45 5e-05
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 45 5e-05
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 44 7e-05
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 44 7e-05
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 44 7e-05
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 43 2e-04
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 43 2e-04
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 42 5e-04
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 42 5e-04
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 42 5e-04
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 39 0.004
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 39 0.004
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 38 0.008
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 33 0.24
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 32 0.31
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 32 0.31
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 32 0.31
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.72
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 31 0.72
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 30 1.7
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 6.7
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 27 8.9
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 90.6 bits (215), Expect = 8e-19
Identities = 40/115 (34%), Positives = 67/115 (58%)
Frame = +3
Query: 258 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 437
+ Q FNKNFY+ H + + +V +N + V G++ P+ F +F + +
Sbjct: 220 IQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEA 279
Query: 438 VKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPPIR 602
++ Y++PTPIQA P + ++++G+A T SGKT AY+ PAIVHI +QP ++
Sbjct: 280 IRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLK 334
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 84.6 bits (200), Expect = 6e-17
Identities = 39/110 (35%), Positives = 68/110 (61%)
Frame = +3
Query: 261 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 440
+L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA P + + +
Sbjct: 86 NLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELL 145
Query: 441 KTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQ 590
+++PT IQ+ WP + ++++ +A T SGKTLA++LPA+VHI Q
Sbjct: 146 YGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQ 194
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = +3
Query: 339 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLV 518
+R + +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q P ++++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 519 GVAXTASGKTLAYILPAIVHINNQP 593
GVA T SGKT A++LP +V I + P
Sbjct: 343 GVAETGSGKTAAFLLPLLVWITSLP 367
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 75.4 bits (177), Expect = 3e-14
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Frame = +3
Query: 258 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 434
V + F KNFY + + + EV+ YR + +TV G++ PI+ + + +
Sbjct: 258 VYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMN 317
Query: 435 GVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPPI 599
+K Y +PT IQAQ P ++++G+A T SGKTLA++LP HI +QP +
Sbjct: 318 VLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPEL 372
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 64.5 bits (150), Expect = 6e-11
Identities = 33/78 (42%), Positives = 43/78 (55%)
Frame = +3
Query: 348 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVA 527
N V VSG V I++F EA F V + V GY +PTP+Q P ++L+ A
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCA 183
Query: 528 XTASGKTLAYILPAIVHI 581
T SGKT A++LP I HI
Sbjct: 184 QTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 64.5 bits (150), Expect = 6e-11
Identities = 33/78 (42%), Positives = 43/78 (55%)
Frame = +3
Query: 348 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVA 527
N V VSG V I++F EA F V + V GY +PTP+Q P ++L+ A
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCA 167
Query: 528 XTASGKTLAYILPAIVHI 581
T SGKT A++LP I HI
Sbjct: 168 QTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 64.5 bits (150), Expect = 6e-11
Identities = 33/78 (42%), Positives = 43/78 (55%)
Frame = +3
Query: 348 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVA 527
N V VSG V I++F EA F V + V GY +PTP+Q P ++L+ A
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCA 164
Query: 528 XTASGKTLAYILPAIVHI 581
T SGKT A++LP I HI
Sbjct: 165 QTGSGKTAAFLLPIIQHI 182
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 63.3 bits (147), Expect = 1e-10
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Frame = +3
Query: 264 LQPFNKNFYDPHPTVLKRSPYEVEE-YRNNHEVTV------SGVEVHNPIQYFEEANFPD 422
++P ++ Y SP +++E Y N + V S V++ P+ FE+A +
Sbjct: 33 MKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAFGSN 92
Query: 423 YVQQG-VKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQ 590
G ++ G+++P+PIQ+Q WP ++ +GV+ T SGKTLA++LPA++HI+ Q
Sbjct: 93 ASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQ 149
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +3
Query: 357 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTA 536
V +G +V PI F + + +++++ +KT GY PTP+Q P ++L+ A T
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTG 213
Query: 537 SGKTLAYILPAIVHINNQPP 596
SGKT A+++P + I P
Sbjct: 214 SGKTAAFLVPLVNAILQDGP 233
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = +3
Query: 294 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTP 470
P + ++S + E R ++ G + PI F E FP + + + K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 471 IQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIV 575
IQ QG P + ++++G+A T SGKT+ ++LP ++
Sbjct: 216 IQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVM 250
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +3
Query: 387 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILP 566
P + F EAN + +Q+ V GY + TPIQ P + +++ A T SGKT A++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 567 AIVHI 581
+ +
Sbjct: 399 IMTRL 403
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +3
Query: 387 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILP 566
P + F EAN + +Q+ V GY + TPIQ P + +++ A T SGKT A++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 567 AIVHI 581
+ +
Sbjct: 399 IMTRL 403
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +3
Query: 387 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILP 566
P + F EAN + +Q+ V GY + TPIQ P + +++ A T SGKT A++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 567 AIVHI 581
+ +
Sbjct: 399 IMTRL 403
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/92 (29%), Positives = 45/92 (48%)
Frame = +3
Query: 306 VLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG 485
V KR +++ R + + G + N I F +++ + + ++P+PIQ Q
Sbjct: 97 VEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSSMSPSLLNRLSENSIRQPSPIQMQS 156
Query: 486 WPDSYVWKNLVGVAXTASGKTLAYILPAIVHI 581
P +N++ A T SGKTLA+ LP I I
Sbjct: 157 IPFMTERRNVLASAPTGSGKTLAFALPVIDEI 188
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE+ N + + GY +PTPIQ P + K++ A T +GKT A++LP +
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILER 209
Query: 579 INNQP 593
+ +P
Sbjct: 210 MIYRP 214
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 387 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILP 566
P + F +++ P +++ V+ GY TPIQ P K+++ A T SGKT A++LP
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 387 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILP 566
P + F +++ P +++ V+ GY TPIQ P K+++ A T SGKT A++LP
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
F EAN + +++ V GY + TPIQ P + +++ A T SGKT A++LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 579 INNQPPIRXR*WSDCF 626
+ ++ + C+
Sbjct: 614 LIDENDLNTAGEGGCY 629
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
F EAN + +++ V GY + TPIQ P + +++ A T SGKT A++LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 579 INNQPPIRXR*WSDCF 626
+ ++ + C+
Sbjct: 614 LIDENDLNTAGEGGCY 629
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
F EAN + +++ V GY + TPIQ P + +++ A T SGKT A++LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 579 INNQPPIRXR*WSDCF 626
+ ++ + C+
Sbjct: 614 LIDENDLNTAGEGGCY 629
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
F + ++ Q ++TM K TP+QA P +++G A T +GKTLA+ +P +
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK 150
Query: 579 INNQP 593
++ P
Sbjct: 151 LSVDP 155
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
F + ++ Q ++TM K TP+QA P +++G A T +GKTLA+ +P +
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK 150
Query: 579 INNQP 593
++ P
Sbjct: 151 LSVDP 155
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 417 PDYVQQGVKTMGYKEPTPIQAQGWPDSYVWK-NLVGVAXTASGKTLAYILPAIVHI 581
P+ V + ++ MG+ EPT IQ+ P + + +++G A T SGKTLA+ +P + +
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARL 218
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +3
Query: 381 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYI 560
H +++ V + ++ G+ +PTPIQ + P K++V ++ T SGKT A++
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFV 79
Query: 561 LPAI 572
+P +
Sbjct: 80 IPML 83
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +3
Query: 381 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYI 560
H +++ V + ++ G+ +PTPIQ + P K++V ++ T SGKT A++
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFV 79
Query: 561 LPAI 572
+P +
Sbjct: 80 IPML 83
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/70 (35%), Positives = 35/70 (50%)
Frame = +3
Query: 432 QGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPPIRXR* 611
+G+K Y +PT IQ S ++VG A T SGKTLA ++P + +
Sbjct: 89 EGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWRAK------ 142
Query: 612 WSDCFGLGRL 641
WS +GLG L
Sbjct: 143 WSPDYGLGAL 152
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 417 PDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHI 581
P + +K M PTPIQ + ++V A T SGKTLA+++P ++ +
Sbjct: 744 PQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 417 PDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHI 581
P + +K M PTPIQ + ++V A T SGKTLA+++P ++ +
Sbjct: 744 PQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKL 798
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 432 QGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
+ V+ +G+ T IQA+ K+++ A T SGKTLA++LPAI
Sbjct: 81 KAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAI 127
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 390 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVW--KNLVGVAXTASGKTLAYIL 563
I F E V + + TM ++ PT IQ P + NL+ A + +GKT A++L
Sbjct: 208 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 267
Query: 564 PAIVHIN 584
+ I+
Sbjct: 268 TMLCRID 274
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 390 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVW--KNLVGVAXTASGKTLAYIL 563
I F E V + + TM ++ PT IQ P + NL+ A + +GKT A++L
Sbjct: 233 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 292
Query: 564 PAIVHIN 584
+ I+
Sbjct: 293 TMLCRID 299
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 390 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVW--KNLVGVAXTASGKTLAYIL 563
I F E V + + TM ++ PT IQ P + NL+ A + +GKT A++L
Sbjct: 617 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 676
Query: 564 PAIVHIN 584
+ I+
Sbjct: 677 TMLCRID 683
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/64 (21%), Positives = 35/64 (54%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE + +K + P+P+QA+ P + ++++ A + +GKTL + + A+ +
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVFSVLAVEN 83
Query: 579 INNQ 590
++++
Sbjct: 84 LDSR 87
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/64 (21%), Positives = 35/64 (54%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE + +K + P+P+QA+ P + ++++ A + +GKTL + + A+ +
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVFSVLAVEN 83
Query: 579 INNQ 590
++++
Sbjct: 84 LDSR 87
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 435 GVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPPIR 602
G+ G+++P+PIQ + ++++ A +GKT AY +P I I QP ++
Sbjct: 57 GIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKI--QPALK 110
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 453 YKEPTPIQAQGWPDSYVWK-NLVGVAXTASGKTLAYILPAIVHI 581
+ EPT IQ+ P + + +++G A T SGKTLA+ +P + +
Sbjct: 8 FSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARL 51
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 101 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 217
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
F + + + + + +G+++ +Q + KN++G A T SGKT A+++P +
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLV 148
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 390 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPA 569
++ F E P+ ++ V YK T +Q ++V + T SGKTLA++LP
Sbjct: 10 LKTFREKLGPELLE--VFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPM 67
Query: 570 IVHINN 587
+ I N
Sbjct: 68 MRMIQN 73
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 525 AXTASGKTLAYILPAIVHINNQP 593
A T SGKT+ Y+LP + + ++P
Sbjct: 163 APTGSGKTICYVLPVLAAVGSKP 185
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 153 RIIAEFVASSKFGTTVSTAIIPV 85
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 153 RIIAEFVASSKFGTTVSTAIIPV 85
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 229 DLQRILFSHQILQILQIYCHRCQIETN-YR-RICCL 128
D +S I QI+ +CH+ +++TN +R RI CL
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 558 CRPTFXRKPFXLRQLNSSRHSYRASLELE 472
C TF K L LNS+RH +A +LE
Sbjct: 537 CSETFATKEAFLSHLNSARHLQQAKKQLE 565
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 294 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 452
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 144 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 194
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 294 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 452
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 171 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,976
Number of Sequences: 27780
Number of extensions: 266882
Number of successful extensions: 840
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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