Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060121.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   3.1  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   3.1  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   3.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   3.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.1  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   9.4  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 157 LQLQEENVKLKSENGKLIEKCVTKEG 234
           LQL E  VK+  +N ++ +K   KEG
Sbjct: 290 LQLNETQVKIWFQNRRMKQKKRMKEG 315


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 483 CFQLDKKKLFCMNIQILNNF 542
           CF LD+K  + +    LNNF
Sbjct: 278 CFLLDEKLSYIILTSFLNNF 297


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 157 LQLQEENVKLKSENGKLIEKCVTKEG 234
           LQL E  VK+  +N ++ +K   KEG
Sbjct: 79  LQLNETQVKIWFQNRRMKQKKRMKEG 104


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 157 LQLQEENVKLKSENGKLIEKCVTKEG 234
           LQL E  VK+  +N ++ +K   KEG
Sbjct: 79  LQLNETQVKIWFQNRRMKQKKRMKEG 104


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 260 KKYSSCR*QCQARENECARKTAD 328
           K+    R QC++ +NEC   T D
Sbjct: 73  KRRIVARVQCRSIKNECPEPTCD 95


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 7   EEKCNRISSPLPGIANKLMKDNLQVNVPDNLI 102
           + KC   +  L  + NK    +LQV + D+L+
Sbjct: 16  KRKCTVSNVSLHSLKNKRSGASLQVGILDSLV 47


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +3

Query: 324 QMEWTEKINAINNQMHDLRTQLDFKVRI*Q----MILILFNLQ*NT 449
           ++E   +++ ++NQ+  +   LD    + Q    ++++L NL  NT
Sbjct: 25  KLEQMRQVHEVDNQLKQMGCDLDIPNSVVQKHLILLMVLVNLIFNT 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,743
Number of Sequences: 336
Number of extensions: 2920
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)