Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060121.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    35   0.010
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    30   0.36 
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    27   1.9  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   2.5  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   3.3  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   3.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   3.3  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   4.4  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   5.8  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.8  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   5.8  

>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 21/51 (41%), Positives = 29/51 (56%)
 Frame = +1

Query: 121 EKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILRTS*KVFK 273
           EK  SET+ ++   L++EN  LK ENG L EK    E E + L+    V+K
Sbjct: 96  EKLASETLREKTQLLEKENGALKVENGYLYEKSRKLEEEMAHLKKKCNVYK 146


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 237 SLNTKNQLKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQ 365
           S++ +   +SI+  + S  LEK+N +++LQ+   EK+ A   +
Sbjct: 213 SVHNQQLEESIKQVSSSIELEKINAEQRLQISELEKLKAAQEE 255


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 10  EKCNRISSPLPGIANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLK 189
           +K +++ S L  I  K   D L+ NV       +    K+D + ++ + L+    N +LK
Sbjct: 93  KKISQVQSLLKIIEKKCSSDFLEANVKSQFTTCENKDSKEDYQILHNKRLEYVSFNDELK 152

Query: 190 S-ENGK 204
           S E G+
Sbjct: 153 SLETGQ 158


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 237 SLNTKNQLKSIQVAAD--SARLEKMNVQEKLQMEWTEKINAINNQM 368
           S+N KNQ   +++A    S   EK+N   KL  E TEKI+++   +
Sbjct: 848 SIN-KNQANELKLAKQKCSNLQEKINFGNKLAKEHTEKISSLEKDL 892



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 282 DSARLEKMNVQEKLQMEWTEKINAINNQ--MHDLRTQLDF 395
           +S +  K N++E+ Q+        ++NQ  ++DLR +LD+
Sbjct: 638 ESLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIELDY 677


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 231 R*SLNTKNQLKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHD-LRTQLDF 395
           R SL+ + Q +  +V A +AR  +++ Q+  Q  WT   NAI N+  D L + L +
Sbjct: 181 RISLSRRGQTRRRRVGA-AARASRVSQQQ--QRAWTRAWNAIRNRAWDALNSDLSY 233


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 91  DNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIE 213
           D L+M  +  +  D ET+  QL  LQEE    + E  +LI+
Sbjct: 416 DKLLMQQQSQQTGDLETLRLQLQALQEELRVEREERQQLIQ 456


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +3

Query: 246 TKNQLKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHDLRTQL 389
           ++N+ K  + A  S +LEK N+Q +L    +E+  A+  +++DL   L
Sbjct: 686 SRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSLAL-EKLNDLEKSL 732


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 70   NLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
            NL+V   D L+   K + + +++  ++QLL L E    L   N  LI+   T   E
Sbjct: 908  NLEVQTLDRLLQKVKEHSEDNTKEKHQQLLDLLE---SLVGNNDNLIDSIKTPHTE 960


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/59 (20%), Positives = 31/59 (52%)
 Frame = +1

Query: 61  MKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
           +KD  ++ +  N +    +YE ++ +T+ + LL   E  ++   E  +  E+ ++++ E
Sbjct: 347 LKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSLEGKLQAHLEKFEQTERDISEKNE 405


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 351 HLFSPSIPSAVFLAHSFSLAWHC 283
           HLFSP +PS + L+ S S A  C
Sbjct: 190 HLFSPPLPSNLALSFSISNASVC 212


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
 Frame = +1

Query: 10  EKCNRISSPLPGIANKLMKDNLQVN--VPDNLIMNDKI--YEKQDSETI-YKQLLQLQEE 174
           +K   I   L     K M+D L++     +N ++  +I   ++  SE    KQ+LQLQ E
Sbjct: 129 QKLEIIEKKLDKSFRKNMEDELRITRLASENNVLISRIDRTKRHFSELFTQKQMLQLQNE 188

Query: 175 NV-----KLKSENGKLIEK 216
           N      K+K EN +L ++
Sbjct: 189 NFKDDYEKIKEENKRLYKE 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,768
Number of Sequences: 5004
Number of extensions: 43869
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)