Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060121.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0312 - 7326092-7326148,7326415-7326540,7327744-7327821,732...    33   0.21 
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    32   0.49 
04_04_1375 + 33040329-33040854,33041611-33041838,33041984-330420...    31   0.64 
03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,349...    29   3.4  
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    29   4.5  
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052...    29   4.5  

>03_02_0312 -
           7326092-7326148,7326415-7326540,7327744-7327821,
           7327916-7328178,7328699-7328741,7329581-7329632,
           7329705-7329871,7330135-7330194,7330291-7330374,
           7330654-7330758,7330840-7330899,7330976-7331032
          Length = 383

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +1

Query: 124 KQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEAS 243
           KQ++ ++ ++L QLQE+   L SEN  L EK    EGE S
Sbjct: 337 KQENSSLKEELKQLQEKCNSLTSENTTLHEKLKELEGEKS 376


>03_05_0432 -
           24231984-24233048,24233391-24235160,24235261-24236582,
           24236668-24237013
          Length = 1500

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 121 EKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILR 252
           + QD+E + K+L  L EEN  LKS    L+E+    E E   L+
Sbjct: 116 DNQDNERLQKELESLSEENKDLKSRISSLLEQTNKAELEVVCLK 159


>04_04_1375 +
           33040329-33040854,33041611-33041838,33041984-33042081,
           33042406-33042450,33042678-33042846,33042917-33043026,
           33043983-33044051,33044085-33044158,33044738-33044804,
           33044876-33044988,33045148-33045237,33046030-33046144,
           33046230-33046388
          Length = 620

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 124 KQDSETIYKQLLQLQE-ENVKLKSENGKLIEKCVTKEGEASILRT 255
           K+  E +  +L +L++ E  K K E+GKL  KC+  E ++S++ +
Sbjct: 302 KKQKEAMKAELAELKKLEKEKKKWESGKLATKCIVAEIDSSVIES 346


>03_01_0455 +
           3487354-3488090,3489172-3489255,3489942-3490554,
           3491356-3491583,3492270-3492437,3492828-3494587,
           3494667-3494670
          Length = 1197

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 91  DNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILRT 255
           D++ +ND IY K   E I ++  + Q ENV++K    K I    + E    ++R+
Sbjct: 467 DSMDINDVIYNKSGHEEIGEE--EAQAENVQIKGNLKKEIISVASDELACEVMRS 519


>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 106  NDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILR 252
            N+ +   + +ET+ K+   L E    L+ ENG L+ +C+  E  +  LR
Sbjct: 1343 NEIVSLTEKNETLCKEYQSLIENYNALEDENGTLLSECMRLEHLSLFLR 1391


>07_03_1731 -
           29102403-29102720,29103529-29103735,29103937-29105210,
           29105298-29105734,29106370-29106764,29106921-29107051,
           29109034-29109052
          Length = 926

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 127 QDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILRTS*K 264
           Q+++ + K +  +Q E   LK +   L E  + KEG+ SIL+ + K
Sbjct: 862 QEAKQLRKTISIMQNETASLKKKIEALEEDILVKEGQISILQDNIK 907


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,294,795
Number of Sequences: 37544
Number of extensions: 234598
Number of successful extensions: 543
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)