Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060121.seq
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42130| Best HMM Match : rve (HMM E-Value=5.9e-13) 30 1.5
SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_49875| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12) 30 2.0
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069) 30 2.0
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11) 30 2.0
SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12) 30 2.0
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 29 2.7
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_12753| Best HMM Match : M (HMM E-Value=0.0006) 29 4.6
SB_13660| Best HMM Match : MtrG (HMM E-Value=3.4) 28 6.1
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 6.1
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_13355| Best HMM Match : HlyD (HMM E-Value=0.29) 28 6.1
SB_8968| Best HMM Match : zf-LSD1 (HMM E-Value=0.49) 28 6.1
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_42130| Best HMM Match : rve (HMM E-Value=5.9e-13)
Length = 975
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 112 KIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
++ E+QD +YK++ L E VK S K +E+C++ G+
Sbjct: 259 ELQEQQDPNNLYKEIESLYIEEVK-SSNKIKCVEQCLSLNGK 299
>SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 112 KIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
++ E+QD +YK++ L E +K S K +E+C++ G+
Sbjct: 180 ELQEQQDPNNLYKEIESLYIEEIK-SSNKIKCVEQCLSLNGK 220
>SB_49875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +1
Query: 46 IANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVT 225
+ANKL++D +N PD + S+ +LL ++ K + G I +C
Sbjct: 100 LANKLVQDKQYLNNPDRYGRSPLQNAVVKSDIRMVKLLLDARPDITHKDDRGDTIMQCAA 159
Query: 226 KEGEASILR 252
+ G +IL+
Sbjct: 160 RTGNEAILK 168
>SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12)
Length = 651
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 112 KIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
++ E+QD +YK++ L E +K S K +E+C++ G+
Sbjct: 7 ELQEQQDPNNLYKEIESLYIEEIK-SSNKIKCVEQCLSLNGK 47
>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
Length = 657
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 82 NVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILR 252
N N +M D++ D I QL +EE K+KSE EKC E + ++L+
Sbjct: 320 NAERNQVMEDQVATLTDHSEI--QLNNAKEEIGKVKSELANCKEKCKRAEQQFNLLK 374
>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
Length = 1702
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 112 KIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
++ E+QD +YK++ L E +K S K +E+C++ G+
Sbjct: 921 ELQEQQDPNNLYKEIESLYIEEIK-SSNKIKCVEQCLSLNGK 961
>SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)
Length = 1358
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 112 KIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 237
++ E+QD +YK++ L E +K S K +E+C++ G+
Sbjct: 371 ELQEQQDPNNLYKEIESLYIEEIK-SSNKIKCVEQCLSLNGK 411
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 237 SLNTKNQLKSIQVAADSARLEKMNVQEKLQMEWTEK 344
SLN + + K IQV + A+ E+ +LQ W EK
Sbjct: 619 SLNPQTRNKIIQVLKEEAQTERQTKSNRLQELWKEK 654
>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1925
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +1
Query: 7 EEKCNRISSPLPGIANK---LMKDNLQV--NVPDNLIMNDKIYEKQDSETIYKQLLQLQE 171
EE+ R+ L + NK L K+N + N+ DN+I++ + E+QD+ ++K L L+
Sbjct: 881 EEQDARLWKTLDLLKNKGLTLNKENCEGAHNIHDNIILHGRTVEEQDAR-LWKTLDLLKN 939
Query: 172 ENVKLKSENGKLIEKCVTKEGEASIL 249
+ + L EKCV + E + +
Sbjct: 940 KGLTLNK------EKCVFRMSELTFM 959
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 82 NVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSEN 198
N+ DN+I++ + E+QD+ ++K L L+ + + L EN
Sbjct: 868 NIHDNIILHGRTVEEQDAR-LWKTLDLLKNKGLTLNKEN 905
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/64 (26%), Positives = 35/64 (54%)
Frame = +1
Query: 55 KLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEG 234
KL ++ V LIM+++ ++++ I + L +LQE N + SEN +L + + +
Sbjct: 433 KLTEERNAVIGEYRLIMSERDNVHRETDKIQEDLHKLQERNETISSENKQLYQLNKSLQD 492
Query: 235 EASI 246
E ++
Sbjct: 493 ELNV 496
>SB_12753| Best HMM Match : M (HMM E-Value=0.0006)
Length = 304
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +1
Query: 124 KQDSETIYKQLLQLQEENVKLKSENGKL 207
++ ++ + K++ +L EEN KL+SEN +L
Sbjct: 211 QEQAKALTKEVCKLVEENTKLESENSQL 238
>SB_13660| Best HMM Match : MtrG (HMM E-Value=3.4)
Length = 567
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 64 KDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVT--KEGE 237
KDN Q +VPD I + Y K D + K L++ + + +I++ K+ E
Sbjct: 409 KDNPQASVPDEKINHKWTYIKLDDFKVPKVAFNLKKAIDQFNKDRATVIQQLDQRYKDVE 468
Query: 238 ASILRTS*KV 267
+I TS K+
Sbjct: 469 VTIATTSKKI 478
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 112 KIYE-KQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEAS 243
KI E + +E++ QL + N +LK ENG L ++ + E EAS
Sbjct: 1885 KIKELNEKNESLSSQLREAISANSQLKEENGILEQRIASLEKEAS 1929
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 124 KQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASI 246
K + + ++L Q+EN+K+ EN KL K + E I
Sbjct: 989 KDKTLKVERELRDSQQENIKMNIENSKLSRKVSSLESSVEI 1029
>SB_13355| Best HMM Match : HlyD (HMM E-Value=0.29)
Length = 327
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 103 MNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEAS 243
+N K++E+ E I K + +EN + + E +I++ VTKE +A+
Sbjct: 158 LNKKLFEQ---EIIAKNEWTVTQENYRFQKERMDIIKQSVTKEKQAN 201
>SB_8968| Best HMM Match : zf-LSD1 (HMM E-Value=0.49)
Length = 379
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 46 IANKLMKDNLQVNVPDNLIMNDKIYEKQDSE-TIYKQLLQLQEENV 180
IA K ++ + +P+ L+ DK++ K D E + K + +QEENV
Sbjct: 325 IAAKNFQELSKNLIPETLLCLDKVFFKLDDEGKVVKVMKVVQEENV 370
>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +1
Query: 82 NVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILRTS* 261
N+P + I+ ++ + Q + YKQ + + ++K G L E+C K LR +
Sbjct: 75 NLPADQIVLEEKRKAQSAINRYKQFINIYPTHLKDPFHIGVLCEQCKHK-ATRKTLRENR 133
Query: 262 KVFKLPLTVP 291
+LPL +P
Sbjct: 134 HDMELPLLLP 143
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 64 KDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQ 162
KD ++ N+ + ++ND+ EK++ ET K LLQ
Sbjct: 3452 KDEIKHNMNISKVLNDRTTEKENLETERKCLLQ 3484
>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1490
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 76 QVNVPDNLIM-NDKIYEKQDSETIYKQLLQLQEENVKLKSENGKL 207
Q+++P N M +D+I EK+ + +++ L+EEN LKS+N L
Sbjct: 113 QIHLPFNEKMTHDQIEEKE----LLRRVSSLEEENTVLKSKNAAL 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,826
Number of Sequences: 59808
Number of extensions: 297892
Number of successful extensions: 709
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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